Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0632 ATGAGTGAAAGTGTATACGATGTGTTTATCAGTTTTCGAGGTATAGATACACGTTCAGGTTTCACAGGAAACCTTCATAGAGCTCTATGTGGGAAACAAATAAAAAGCTTCATGGATGATAAAGATCTTGAGAAAGGAGCAGAAATAAATCCAGCTCTTGATAAAGCAATCCAGAACTCTAGAATTGCACTTGTAGTTCTTTCTAAGAACTATGCATCTTCAACTTTTTGTTTGGATGAACTTGAGAAGATTATGGATTGCTCAAAAGATAAGGGCATGCTTGTTTTGCCTGTGTTTTATGGAGTTGACCCTTCTGATGTTCGCTATCAGAAAGGAAAATATGCAGATGCATTGAACAAACATGAAGCCAGAATCATTGATGAGAAGGAAAAAATTGAAAAGTGGAGGTTTGCTTTGAAAAAAATTGCTCATTTCTCTGGTTGGCATTTCAACCGTGACAGGTACGAGTATGAGTTGATTGATACTATTGTTGAAGACATTATAAAGAAGATTCATAGATTGCGTGAAGGTGAAAAGGAGAAAATAATTTGTAATGTGAATGAGAAGCATGTTACCCAATACAATGATGTAGAATACTTGGTCATAGATTCAACTCCACAAAAGTCTCTTGTTGAACAATTTAAGGAAATGAGTATAGCTGGAATTCTCAACTCTGATAGTAGGAAAATGATGGCAGCTGCTGCTCTGATCCAGCGCAGATTCCGTACGTGGATTGTCCGTAGAGAACTTAGCCACATGCGAGGTCAGGCCATTAAAATTCAAGCTGCTTTCAGGGGATATCAAGTGCGGAAGCAATATCATAAAATAGTTTGGTCCGTTGGAGTGCTCGAGAAAGCAATCCTGCGTTGGCGTCTAAAGAGACGAGGCTTATGCGGCTTCAAGCATGGAAATGAAACAGAGGAGGACTTCTTCCGGGCGGGTAGGAAACAAGCTGAAGAACGTGTCGAAAGGTCTGTAGCTTGTGTAAAGGCCATGCTCAGTTCTAAGAAAGCACAAGAAGAGTATAGGAGGATGAAATTGGCTCATTCTCAAGCAAAGCGTGTCGTCGAGGTATACCGTCTGAATGATGATGGGAAATGGTTCGACCAGGGCATTGGGCATGTCAGTGTTGATTATTTGGAGCGTTTGGAAGGGCAGGGACAGGTTTTATTTGTTTGTGGAGAAGAAAATAATGAGACCCTACTTTTGCATCACATCACTTCTGATGATATCTATAGGAAACAACAAGATACAGTTATATCATGGAGAGATCCAGAATATGCTACAGAACTGGCACTTAGATTTCAAGACCCTAGTGAATGCTCTTACATATGGGAACATATTTGCAGTGTGCAAAGCAATATACAGTCTAATACTTTAAACAAAAATGGAGTTTGGCCTGCAACAAGGAGGAAGAAAAGAATAAAGGTAAAGCGCAATATTCAAGGCATGAAGGAACATTAG 1464 0.3969 MSESVYDVFISFRGIDTRSGFTGNLHRALCGKQIKSFMDDKDLEKGAEINPALDKAIQNSRIALVVLSKNYASSTFCLDELEKIMDCSKDKGMLVLPVFYGVDPSDVRYQKGKYADALNKHEARIIDEKEKIEKWRFALKKIAHFSGWHFNRDRYEYELIDTIVEDIIKKIHRLREGEKEKIICNVNEKHVTQYNDVEYLVIDSTPQKSLVEQFKEMSIAGILNSDSRKMMAAAALIQRRFRTWIVRRELSHMRGQAIKIQAAFRGYQVRKQYHKIVWSVGVLEKAILRWRLKRRGLCGFKHGNETEEDFFRAGRKQAEERVERSVACVKAMLSSKKAQEEYRRMKLAHSQAKRVVEVYRLNDDGKWFDQGIGHVSVDYLERLEGQGQVLFVCGEENNETLLLHHITSDDIYRKQQDTVISWRDPEYATELALRFQDPSECSYIWEHICSVQSNIQSNTLNKNGVWPATRRKKRIKVKRNIQGMKEH* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0632 487 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 4 175 - -
Lan4g0632 487 SMART till_3 5 145 IPR000157 GO:0007165
Lan4g0632 487 Gene3D - 1 176 IPR035897 -
Lan4g0632 487 Pfam IQ calmodulin-binding motif 257 274 IPR000048 GO:0005515
Lan4g0632 487 Pfam IQ calmodulin-binding motif 232 250 IPR000048 GO:0005515
Lan4g0632 487 Pfam TIR domain 6 174 IPR000157 GO:0007165
Lan4g0632 487 ProSiteProfiles TIR domain profile. 4 171 IPR000157 GO:0007165
Lan4g0632 487 SUPERFAMILY PH domain-like 356 452 - -
Lan4g0632 487 Gene3D - 227 277 - -
Lan4g0632 487 ProSiteProfiles IQ motif profile. 253 277 IPR000048 GO:0005515
Lan4g0632 487 ProSiteProfiles IQ motif profile. 230 259 IPR000048 GO:0005515
Lan4g0632 487 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 148 IPR035897 -
Lan4g0632 487 Gene3D - 350 465 IPR011993 -
Lan4g0632 487 PANTHER TMV RESISTANCE PROTEIN N-LIKE 4 175 - -
Lan4g0632 487 SMART iq_5 229 251 IPR000048 GO:0005515
Lan4g0632 487 SMART iq_5 252 274 IPR000048 GO:0005515
Lan4g0632 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 280 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0632 Lan-Chr4 8685703 8689318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0632 226 353 CAMTA Transcription Factor Family AT3G16940 57.463 7.42e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0632 - - lang:109345548 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0632 4 8685703 8689318 Lan16g0202 16 1583408 1600020 LSH
Lan12g0890 12 15924735 15935505 Lan4g0632 4 8685703 8689318 PCT
Lan4g0632 4 8685703 8689318 Lan12g0890 12 15924735 15935505 PCT