Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0614 ATGGATGTAAAAGGAGGAGTACTAAGCAACACAAGCACCATGATCCAAAGTGAAGAAGAGGATATGGACCTTAGAAGAGGACCTTGGACCGTTGATGAAGACCTTGCTCTCATTAATTACATTGCTAATCATGGTGAAGGTCGATGGAACTCACTTGCTCGTTCTGCTGGACTCAAAAGAACCGGCAAGAGCTGCAGATTGAGATGGTTGAATTATTTGCGTCCTGATGTTCGACGTGGTAACATCACACTTGAAGAACAACTTCTTATTCTTGAGCTCCATGCGCGCTGGGGAAATCGGTGGTCCAAAATTGCTCAATATTTGCCAGGAAGAACAGACAACGAGATCAAGAACTACTGGAGAACTCGTGTCCAAAAGCATGCTAAACAACTTAAATGTGATGTGAATAGCAAACAATTCAAGGATGCCATGCGCTATCTATGGATGCCAAGGTTGGTAGAGCGCATCCAAGCCGCGGCAGCTACAACCACAACCACAACTACTGATTCATCAACCCCATCTGCCATTACTAGAAATGTCACCAACAACAACAACAACATCACATACAACAACCTTAACAATAACAATTTTGAGGTTCATAATGAAGGGAACATGATGTTATCTCCATCAATTATGAACAACAACTTTGGTTGTTCACAAGTTAAACAAAGCTATACCACAGAGAACAGTAGTGCAGGCACCTCATCAGACTCTTTTGGAACCTATGTGTCACCGGTCTCGGACATAAATCATGATTACTACAACGTACTACTTGGTAGTAGCAACAATAACCCTAATCTTGGTTATCAACAACAACAAGATCATCAAGTAAACTTCTTAGATTGCATTACAAGCCCATCAGGATTATGCTCCCAAGAGATGGATTTCCAAGCTATGGAACCAAACAACCAGTGGATTCAGAATGGGGACACATTCAACAATTTCTGGAGTTTTGAAAACATGTTACAACAATTTAATGACAACATGTGA 990 0.4121 MDVKGGVLSNTSTMIQSEEEDMDLRRGPWTVDEDLALINYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHARWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAATTTTTTTDSSTPSAITRNVTNNNNNITYNNLNNNNFEVHNEGNMMLSPSIMNNNFGCSQVKQSYTTENSSAGTSSDSFGTYVSPVSDINHDYYNVLLGSSNNNPNLGYQQQQDHQVNFLDCITSPSGLCSQEMDFQAMEPNNQWIQNGDTFNNFWSFENMLQQFNDNM* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0614 329 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Lan4g0614 329 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Lan4g0614 329 CDD SANT 28 73 IPR001005 -
Lan4g0614 329 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
Lan4g0614 329 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Lan4g0614 329 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Lan4g0614 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 77 IPR017930 -
Lan4g0614 329 SMART sant 25 75 IPR001005 -
Lan4g0614 329 SMART sant 78 126 IPR001005 -
Lan4g0614 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 128 IPR017930 -
Lan4g0614 329 CDD SANT 94 122 IPR001005 -
Lan4g0614 329 Gene3D - 83 146 - -
Lan4g0614 329 PANTHER MYB TRANSCRIPTION FACTOR 1 322 - -
Lan4g0614 329 Gene3D - 23 79 - -
Lan4g0614 329 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 322 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0614 Lan-Chr4 8552998 8555187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0614 22 166 MYB Transcription Factor Family AT1G48000 76.552 3.12e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan4g0614 Myb_DNA-binding 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0614 K09422 - gmx:100805341 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0614 4 8552998 8555187 Lan16g0230 16 1815007 1817021 LSH