LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan4g0603	ATGGGTGCTCCTAAGCAGAAATGGACATCAGAAGAAGAAGCAGCATTGAAAGCTGGAGTTGTTAAGCATGGGGTTGGTAAATGGCGTACAATACTCAAGGATCCAGAGTTTAGTGGTGTCTTATATTTGCGGTCAAACGTGGATCTCAAGGATAAATGGAGAAATTTGAGTGTGATGGCAAATGGATGGACCTCCAGGGAGAAGTCTAGATTAGCAGTCAAAAGGGTGCATCAGACCCCAAGACATGATGAGAACTCCATGGCTATCACTCTTGTAGTTCCGAGTGACGAAGAAATTGCTGATGATAAGCCTTTTCAACTTTCTAAAGATATGATGCAGCTTCCTGGTCCGAAAAGGTCTATAGTAAGGTTGGATAACCTTATAGTTGAAGCAATAACTACCTTGAAGGAGAACGGTGGTTCTAATAAGACAACTATAGCCTCTTTCATAGAGGATCAATATTGGGCACCTCCAGACTTCAAAAGGTTGCTGTCATCTAAATTAAAGTTTTTGACAGCAAGTGGAACACTGATCAAGGTAAAACGCAGGTATAGAATTGCACCTACTCCAGCATATTCTGACAGAAGAAGAAACTCACCCATGTTATTAACAGATGGGAGGCAGAAAGCCTCTATGAAATTTGACAGGGATGAGGTCAATGTCCTCACAAAGTCTCAGATAGATTTAGAGTTAGCAAAGATAAGGTCCATGACTCCGCAAGAGGCAGCTGCAGTTGCTGCTCGAGCAGTTTCTGAAGCTGAAGCTGCCATAGCAGAAGCCGAAGAGGCAGCAAGGGAAGCAGAGGCAGCAGAAGCTGATGCAGATGCAGCAGAAGCTTTTGCAGAAGCTGCAATGAAAACAATGAAAGGGCGAGACACCCCAAATATGATGATCCCTCTTGATGGAAGTTTGAAGAATGGGACATGA	927	0.4358	MGAPKQKWTSEEEAALKAGVVKHGVGKWRTILKDPEFSGVLYLRSNVDLKDKWRNLSVMANGWTSREKSRLAVKRVHQTPRHDENSMAITLVVPSDEEIADDKPFQLSKDMMQLPGPKRSIVRLDNLIVEAITTLKENGGSNKTTIASFIEDQYWAPPDFKRLLSSKLKFLTASGTLIKVKRRYRIAPTPAYSDRRRNSPMLLTDGRQKASMKFDRDEVNVLTKSQIDLELAKIRSMTPQEAAAVAARAVSEAEAAIAEAEEAAREAEAAEADADAAEAFAEAAMKTMKGRDTPNMMIPLDGSLKNGT*	309

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan4g0603	308	SUPERFAMILY	Homeodomain-like	2	71	IPR009057	-
	Lan4g0603	308	SUPERFAMILY	"Winged helix" DNA-binding domain	117	197	IPR036390	-
	Lan4g0603	308	ProSiteProfiles	Myb-like domain profile.	5	57	IPR001005	-
	Lan4g0603	308	PANTHER	TELOMERE REPEAT-BINDING FACTOR 1	1	297	-	-
	Lan4g0603	308	ProSiteProfiles	Linker histone H1/H5 globular (H15) domain profile.	120	188	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Lan4g0603	308	SMART	sant	4	59	IPR001005	-
	Lan4g0603	308	Gene3D	-	118	197	IPR036388	-
	Lan4g0603	308	CDD	H15	126	191	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Lan4g0603	308	Pfam	Myb-like DNA-binding domain	5	56	IPR001005	-
	Lan4g0603	308	MobiDBLite	consensus disorder prediction	287	308	-	-
	Lan4g0603	308	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	1	33	IPR017930	-
	Lan4g0603	308	Coils	Coil	243	280	-	-
	Lan4g0603	308	SMART	h15plus2	118	183	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Lan4g0603	308	Gene3D	-	2	59	-	-
	Lan4g0603	308	Pfam	linker histone H1 and H5 family	125	181	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Lan4g0603	308	CDD	SANT_TRF	6	56	-	-
	Lan4g0603	308	PANTHER	SINGLE MYB HISTONE 4	1	297	IPR044597	GO:0003691

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan4g0603	Lan-Chr4	8359082	8364005	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan4g0603	1	298	Single Myb Histone (SMH) Gene Family	AT1G49950	65.789	2.27e-104	305

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Lan4g0603		Linker_histone	9.7e-09	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan4g0603	K09422		-	gmx:100780698	401.364