Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0594 ATGGCTTCTTCTTCTAGAATTCGTAGTGTTGAAGAAGAAGGAGGAGAAAACTCTCCTGAGAGAAAGAAAGCTAAGGGCTCTAATTACGTGCGTCACAATCATGACCAAATAGCTAAACTTGAAGAATTGTTCAAACAGCAACCTACTCCAGATGAAAACCAAAGATATCAAATAGCTCAGGATCTAGGGCTTACACCAAAACAAGTAAAGTTTTGGTTTCAGAATAAGAGGACTCAGAAAAAGATTAAGAAGGCTCATAAACTCGTTGAGACGTACATCGAGAAACCGGAGTCAGTATCCGAGTTGCAACTGGACCTTACCCTAAGAATAGGATGTTCACATGATCCCTCACCAGCAATTTTTCCAAACTCATCAGAAGTACAAAGTCTTTCTCCTAATCCAGGTCCTGCTTCTGATAAAAATACAATGCCCAAAGCACAAATGATAAGTGCTGTAATTGCTGCCAAGGAAGAACTAGTTAGGCTTTTAAGCACCAATGAGCCCCTATGGATTAAGTCTCCAACTGATGATAGAAGACTAATTCTTCATCCTATATGCTATGAAAGCTTCTTTCCTAGGGTTTCTCCCTTGATCAAAAGTTCCAAAGCAAGAGAAGAATCATCAAAAGGGTCAGGAATAGTGGGAATTAATACTAGGAGATTAATTGACATGATTATGAATTCGGAAACATGGACTCATCTTTTTCCAACAATTGTTTCCAAAGCTCATACAATCCAAGTAATTGAGAAGGGTTCATTCGAAAATCGAAGTGGAGCTATATTACTGATGTACATGGATATGCATGTTCTTTCACCTTCAGTACCATCCAGGGAATTCTACTTTCTTCGCTATTGTGCACAAATTGAAAATGGTATTTGGGTTATCACAGATGTGTCTTTGGATTACTTAGAAGATGAGAAAACCATTCCTTCTTCATGTTGGAGGTTTCCCTCAGGATGTCTTATTAGAGAAATGCCTAATGCTTTTACTGAGGTTACTTGGGTGGAACATGTGGAAGTGGATGAGAACATCTCACCACACTCTCTGTACAAAGATGTTGTTAGCACTGGTATTGCATATGGTGCAGAAAGATGGCTTTCTGAACTTTCAAGAATGTGTCACAGACTTTCAAGCTTCGTGCCTAACTACATACCTTGTGATGATTCTGGTGCAGTAATCAGTGTACCTGAAGGGAGGAAGAGTCTCATTAAGCTTTCACACAGAATGATGAAAAACTTCACAGAAATGCTAAGCATGTCAAAGAAAAGTTCACAACAAATTATAATGAGTGAAGGGATTTGGATTTCTGTGAAAGAGAACATAAAACATGGCCATGAAAATGCAAAGAGTTTGGTTGTAGCAACCTCTTTTTGGGTCCCAAACCCTTCAAATGATGTTGTTAACTTTTTCATAGGTGCAGAAAAACGTGCTAAGTGGGATTTTCATTCAACAGAAAATAATCCACTTCTTGAGCTTTGTCGAATTTCTAACAGACCTCACTCTGCAAACTTTATATCAGTGTTTCAGGAAACAAAACCTGCTGTGCCAAGAGAACGTGGATTGATAATTCAAGAAATATTTATGACCCCTTTGGGATCATATATTGTATATTCTCCAATTAATGTGGATGATTTATCTATGACTGTAAGGGGCCATGATTCATCAAAGGTTTTTGTTCTACCATCTGGTATCACTATTTCTGAATTACCTGAATCTACTGTTCAAGAAGCTTCTAGTAGCAGTGGAAATCATGGTGCAACAAGAGGATCATTGGTAACTGTAGCTTTGCAAATTGAGATATCAGCTGCTATAAATTCAGATTCAGTGGATGCTGCAAAAGCACTAGTGATATCAACTATGCTCAAGATTAAGGATGGTTTGAATTTCTATGATTTGGTGTGA 1902 0.3807 MASSSRIRSVEEEGGENSPERKKAKGSNYVRHNHDQIAKLEELFKQQPTPDENQRYQIAQDLGLTPKQVKFWFQNKRTQKKIKKAHKLVETYIEKPESVSELQLDLTLRIGCSHDPSPAIFPNSSEVQSLSPNPGPASDKNTMPKAQMISAVIAAKEELVRLLSTNEPLWIKSPTDDRRLILHPICYESFFPRVSPLIKSSKAREESSKGSGIVGINTRRLIDMIMNSETWTHLFPTIVSKAHTIQVIEKGSFENRSGAILLMYMDMHVLSPSVPSREFYFLRYCAQIENGIWVITDVSLDYLEDEKTIPSSCWRFPSGCLIREMPNAFTEVTWVEHVEVDENISPHSLYKDVVSTGIAYGAERWLSELSRMCHRLSSFVPNYIPCDDSGAVISVPEGRKSLIKLSHRMMKNFTEMLSMSKKSSQQIIMSEGIWISVKENIKHGHENAKSLVVATSFWVPNPSNDVVNFFIGAEKRAKWDFHSTENNPLLELCRISNRPHSANFISVFQETKPAVPRERGLIIQEIFMTPLGSYIVYSPINVDDLSMTVRGHDSSKVFVLPSGITISELPESTVQEASSSSGNHGATRGSLVTVALQIEISAAINSDSVDAAKALVISTMLKIKDGLNFYDLV* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0594 633 CDD START_ArGLABRA2_like 145 373 - -
Lan4g0594 633 SUPERFAMILY Bet v1-like 394 611 - -
Lan4g0594 633 SMART START_1 150 375 IPR002913 GO:0008289
Lan4g0594 633 ProSiteProfiles 'Homeobox' domain profile. 23 83 IPR001356 GO:0003677
Lan4g0594 633 SUPERFAMILY Bet v1-like 145 376 - -
Lan4g0594 633 MobiDBLite consensus disorder prediction 9 31 - -
Lan4g0594 633 Gene3D - 197 374 IPR023393 -
Lan4g0594 633 CDD homeodomain 31 84 IPR001356 GO:0003677
Lan4g0594 633 ProSitePatterns 'Homeobox' domain signature. 58 81 IPR017970 GO:0000981|GO:0006355
Lan4g0594 633 ProSiteProfiles START domain profile. 141 378 IPR002913 GO:0008289
Lan4g0594 633 SUPERFAMILY Homeodomain-like 17 81 IPR009057 -
Lan4g0594 633 MobiDBLite consensus disorder prediction 1 31 - -
Lan4g0594 633 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 21 629 - -
Lan4g0594 633 SMART HOX_1 25 87 IPR001356 GO:0003677
Lan4g0594 633 MobiDBLite consensus disorder prediction 122 141 - -
Lan4g0594 633 Pfam Homeodomain 30 81 IPR001356 GO:0003677
Lan4g0594 633 Pfam START domain 154 374 IPR002913 GO:0008289
Lan4g0594 633 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 629 IPR042160 -
Lan4g0594 633 Gene3D - 10 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0594 Lan-Chr4 8299626 8304983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0594 70 627 Homeobox Transcription Factor Family AT1G73360 36.627 2.59e-108 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan4g0594 START 3e-31 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0594 K09338 - gmx:100794552 429.869