Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0585 ATGGAGGATTCCGACGGAGTCCTCAACTTCGATTTCGAGGGCACTCTCGACGCCGCTCCTCTCCCCTCCATCACCACTACCGTCCCCTCCTCTTCCGCTCCTCTCATCCACCACGATGCCTCTTCTGTCGCTTCCTCCATTCCCAACGGCAACGCCGTCGCCATAACCCCTCATTCTGCCTCCGACCACCCCTCCGCCAATGTCCAAGGGCGGCGGAGCTTCCGGCAGACGGTGTGCAGGCATTGGCTTCGAAGCCTGTGCATGAAGGGAGACGCGTGCGGGTTCCTTCATCAGTATGATAAGGCGAGGATGCCGGTGTGCCGGTTTTTTCGGCTTTATGGAGAGTGCCGGGAGCAGGATTGTGTTTATAAACACACCAATGAAGATATCAAGGAGTGTAACATGTACAAGTTAGGATTTTGTCCCAATGGGCCTGATTGCCGATATAGACATGCAAAATCTCCTGGACCTCCACCTCCTGTTGAAGAGGTCCTTCAAAAGATCCAACATTTGTATAATTATAATGGCCCCAACAAATTTTTCCAACAAAGGGGTGCTAGCTATAATCAACAAGTTGAAAGATCTCAGTTTCCTCAAGGAGTTAATTCTACAAATCAAGGCGTGGCTGCAAAACCATTGGTAGCAGAGCCAGGTAATGCCCAGCAGCAGCTACAAGTTCAACAGTCTCAGCAGCAGGTCAACCAGAGCCAAATGCAAAGTCCTGCTAATGGCCAGACCAACCAAGCCAATAGAACTGCAACCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATCTTGAGTTATCTGTGCAACAAGGAGTATGGGCAACTCAAAGGAGCAACGAATCCAAACTAAATGAAGCTTTTGACTCTGTGGAAAATGTGATATTGATTTTCTCAGTCAATCGAACTCGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTTCCGGGGGAAACTGGAAATATGCTCATGGAACTGCACATTACGGGCGGAATTTCTCTGTTAAATGGTTAAAGTTATGTGAACTGTCGTTCCACAAAACACGCCATTTACGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAAGAGCTGGAGCCCTCTATTGGTGAGCAATTAGCATCCTTGCTTTATCTGGAGCCAGACAGTGAGCTCATGGCTATGTCAATTGCAGCAGAGTCTAAACGAGAAGAAGAGAAAGCAAAGGGAGTAAATCCAGATAATGGAGGAGAAAATCCAGATATTGTACCATTTGAAGACAATGAAGAAGAAGAAGAGGAAGAGAGTGACGAAGAGGAGGAGAGCTTTGGTCAAGGTGTTGGGCCACCTAGTCAAGGCAGAGGAAGGGGCAGAGGCATGATGTGGCCGCCTCACATGCCTCTTGGGCGTGGAGCCAGACCTATGCCTGGAATGCCAGGTTTTAACCCAGGAATGATGGGTGATGGATTACCCTATGGACCTGATGGATTTGGTATGCCAGATCTCTTCGGTATGGGGCCCCGTGCTTTTGCTCCATTTGGTCCTAGGTTCTCTGGTGATTTTGGAGGGCCCCCAGCAGCCATGATGTTTCGTGGGCGACCTACACAACCTGGGATGTTTCCTGGTGGTGGGTTTGGGATGATGATGAATCCCGGACGCCCTCCCTTTATGGGAGGAATGGGGGTTGGTGGTGGAAATCCGTCAAGAGGTGGTAGGCCAGTCAACATGCCTACAATGTTTCCCCCACCCCCGCCCCCACCTCAAAATGCCAACCGGGTCCCCAAAAGAGATCAAAGAACTAATGACCGGAACGATAGGCACGGCTCAGGACCAGAGCAGGGCAGGAGTCAGGACATGCAGAGTCAAACTGGCGGACCTGATGATGACATGCAATACCAGCAAGGATACAAGGCAAATCAGGATGATCAGAACGAAGATAGTGAAAGCGAGGATGAAGCACCAAGACGGTCAAGACATGGAGAGGGGAAAAAGAAAAGGGACGCGTAG 2043 0.4919 MEDSDGVLNFDFEGTLDAAPLPSITTTVPSSSAPLIHHDASSVASSIPNGNAVAITPHSASDHPSANVQGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYNYNGPNKFFQQRGASYNQQVERSQFPQGVNSTNQGVAAKPLVAEPGNAQQQLQVQQSQQQVNQSQMQSPANGQTNQANRTATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVSGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAMSIAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGQGVGPPSQGRGRGRGMMWPPHMPLGRGARPMPGMPGFNPGMMGDGLPYGPDGFGMPDLFGMGPRAFAPFGPRFSGDFGGPPAAMMFRGRPTQPGMFPGGGFGMMMNPGRPPFMGGMGVGGGNPSRGGRPVNMPTMFPPPPPPPQNANRVPKRDQRTNDRNDRHGSGPEQGRSQDMQSQTGGPDDDMQYQQGYKANQDDQNEDSESEDEAPRRSRHGEGKKKRDA* 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0585 680 SMART c3hfinal6 129 153 IPR000571 GO:0046872
Lan4g0585 680 SMART c3hfinal6 101 127 IPR000571 GO:0046872
Lan4g0585 680 SMART c3hfinal6 73 99 IPR000571 GO:0046872
Lan4g0585 680 MobiDBLite consensus disorder prediction 569 680 - -
Lan4g0585 680 MobiDBLite consensus disorder prediction 411 484 - -
Lan4g0585 680 ProSiteProfiles Zinc finger C3H1-type profile. 127 154 IPR000571 GO:0046872
Lan4g0585 680 MobiDBLite consensus disorder prediction 218 254 - -
Lan4g0585 680 MobiDBLite consensus disorder prediction 435 454 - -
Lan4g0585 680 MobiDBLite consensus disorder prediction 625 652 - -
Lan4g0585 680 MobiDBLite consensus disorder prediction 661 680 - -
Lan4g0585 680 Gene3D - 63 130 - -
Lan4g0585 680 Coils Coil 219 239 - -
Lan4g0585 680 SUPERFAMILY CCCH zinc finger 73 104 IPR036855 GO:0046872
Lan4g0585 680 Pfam YT521-B-like domain 261 395 IPR007275 GO:0003723
Lan4g0585 680 MobiDBLite consensus disorder prediction 607 624 - -
Lan4g0585 680 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45 1 678 - -
Lan4g0585 680 MobiDBLite consensus disorder prediction 588 603 - -
Lan4g0585 680 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 1 678 IPR045168 -
Lan4g0585 680 Gene3D ph1033 like domains 238 399 - -
Lan4g0585 680 ProSiteProfiles Zinc finger C3H1-type profile. 73 100 IPR000571 GO:0046872
Lan4g0585 680 ProSiteProfiles YTH domain profile. 261 396 IPR007275 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0585 Lan-Chr4 8193726 8204232 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan4g0585 YTH 1e-18 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0585 K14404 - gmx:100802826 1030.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0585 4 8193726 8204232 Lan16g0288 16 2303425 2312625 LSH