Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0574 ATGGAAAGCGGTGAGAGACGAAAGAAAGGAAGAGAGGAAAGATCAGAAGAGCTGATTCTTCAACCACAATGGCGCCGACAAAACCCAAAACCTCCTTCTCCTTCTCCTTCTTCGGAGGTTTCTCTTCAACCCGAATGGAGAAGGCGAGGTTCTAATTCAACAGCTACTACCACTTTTGCTTATCCCTGGAACCAAAATTATACTTCAAATCTTAATCCCTACCGTAACAATTCAATTTCATCATTCCAAAATGATTCTGCTCTTCCCAACATAGAAACATTACACATATCAAAACAATTACCTACTTCATTTCTCGCCCCTCAAAAGAAGGACAGAGTCTCACCAATTCCAAGACCTGATAACGGTGGCACATCAGCAATTCTAACTACCAGACTTCGTGTCAATCACTTCCATGTTAACTTCAACCCTGACACTACGATAATGCATTATAATGTCGCTGTGAAACCGATGTTTTCGTCGAAGCGTGGCCGGCCGCAGCAATTATCGAAGTCTGATCTCATTATGATTAGAGAAAAACTGTTTTCTGATGATCCTCTGAGATTGCCGTTGGAAATGACTGCACATGATGGTGCTAAAAATATCTATAGTGCTGTAAGGTTGCCGCAAGAAACTTTTACTGTGGATATCTCTGAAGGAGAGGATGAAAAGAGTGGTTCATATAATGTTACAATAACACTTGTTAATACACTCAAGCTTCGCAAGTTAATTGATTATCTTAGCGGCCAAGGGATTTCAATCCCTAGAGATATTTTACAAGGGATGGATGTGGTGATGAAAGAGAATCCGGCTAGGTGTACAATTTCCATGGGACGGCATTTCTATCCCATGGATCCGCCTTTGGTGATGAAGGATCTCCACCATGGCATAATTGCTGTTGGGGGGTTTCATCATAGTTTAAAGCCTACATCTCAGGGTTTGTCCTTATGTGTGGACTACTCAGTGTTGGCTTTCCGAAAGCGAATGTCGGTTTTGAACTTCTTGCATGAACATATTGATGGCTTTAATTTGAATGAATTTGATAGCTTTAGGAAACGTGTTGACGAGGCACTTATTGGATTGAAGGTTAATGTGACTCATCGTAAGTCCAGCCGGAAATACATTATTGGGAGATTAACACCTGTGAATACAAGGTATGTCACTTTCCCCAATGACAATGCCAAGGGATGGATTCTCTCAAAGGATGTTAGCCTTCTTAGCTTTTTTAGAGACAAGTATGGCAAGGATATTGTACACAAAGATATTCCTTGTTTAGATTTAGGGAAAGGCAAGAAGAAAAACTATGTACCTATGGAATTCTGTATTTTAGTTGATGATCAAAGATACCCAAAGGAGCGATTGGATGGCTTTGCCGGGAAGACATTGAAAGCTATGTCACTAGCTCACCCAAATGAGAGGGAGAGTGCGATACAGAAGATGGTGCAGTCAAGTGATGGGCCTTGCGGTGGTGGTGTCATTCACAATTTCGGAATGAGTGTCAACAAGAACATGACATCCATTGTAGGACGTGTCATTGGCCCACCAGAATTGAAGCTAGGTGATCCAACTGGCAAGACTATCAAGATAACAGTGGATATGGAGAAATGCAACTGGAACCTTGTTGGAAGATCAATGGTGGAAGGCAAACCAGTTGAGCGTTGGGGCATTCTTGATTTCACCAGTTTTGGGTCTTATAGATGCAAATTGAAAGTCAATGAATTCATTCAAAATCTTATTGGCAAATACAAAAAGTTTGGTATAGACATGCGAGAGCCCATTTGGTATGAAGAATCTTCAATGCAGATACTTGCGAGTAATGATTCGCTATCTGACTTACTTCAAAAAATTAACAACATTTGTAAATATAACCAAGGTCCCCTGCAATTTCTTCTCTGTGTAATGAGTAAAAGAAGTCCAGGTTACAAGAACCTCAAGTGGATTTCTGAGACCAAAGTTGGTATAGTAACACAATGTTGCTTGTCTAATAGTGCTAATGAAGGGGATGACCTATTTTTTACTAATCTGGCTCTTAAGATCAATGCCAAGCTTGGAGGCAGCAATGTGGAGCTCAGTAATAGGCTCCCTTACTTTGAGGGTGAAGGATATGTTATGTTTGTCGGAGCTGATGTCAATCACCCTGGTTCTCGGGACACCAGGAGTCCATCAATTGTTGCTGTGGTTGCAACTGTTAATTGGCCTGCTGCAAATCGTTATGCAGCACGTGTTTGCCCTCAGTACAATCGGTGTGAGAAAATATTGAACTTCGGGGAGATTTGCCTTGAGCTTGTTGCATGTTATAGGAGGAAAAATGGAGTTAGGCCAGAAAAAATAGTTGTTTTTCGTGATGGAGTCAGTGAGTACGAATTTGATATGGTTCTTAATGAAGAGCTACTAGATTTGAAGATAGCATTCGAAAGATCAAATTACTTCCCAACCATCACTGTTATTGTAGCACAAAAGCGACATCAAACAAGATTCTTTCCAGAGGGTTGGAGGGATGGGTCTTCCAGTGGCAATATTTTGCCTGGAACAGTTGTGGACACAAAAGTTATACACCCTTTTGAGTTTGACTTTTACCTTTGTAGTTACTATGGAAGCCTAGGCACAAGCAAGCCCACTCACTACCATGTCTTATGGGATGAGCACAAGTTTACATCTGATGAATTGCAGAAGCTCATATATGAGATGTGCTTCACCTTTGCAAGGTGCACTAAACCTGTATCTTTAGTACCTCCAGTATACTATGCCGACCTTGCTGCTTATAGAGGACGCTTATACCATGAAGCAAGGAATGGGACTCTGAAATCGGCAGCATATTCAGCTCCTAAAGGTTCTTCATCGGTTTCACCAACAGCTTCATTTGAACAGGGATTTTATAGGTTGCATGCTGACCTGGAAAATATAATGTTCTTCATCTAA 2916 0.4115 MESGERRKKGREERSEELILQPQWRRQNPKPPSPSPSSEVSLQPEWRRRGSNSTATTTFAYPWNQNYTSNLNPYRNNSISSFQNDSALPNIETLHISKQLPTSFLAPQKKDRVSPIPRPDNGGTSAILTTRLRVNHFHVNFNPDTTIMHYNVAVKPMFSSKRGRPQQLSKSDLIMIREKLFSDDPLRLPLEMTAHDGAKNIYSAVRLPQETFTVDISEGEDEKSGSYNVTITLVNTLKLRKLIDYLSGQGISIPRDILQGMDVVMKENPARCTISMGRHFYPMDPPLVMKDLHHGIIAVGGFHHSLKPTSQGLSLCVDYSVLAFRKRMSVLNFLHEHIDGFNLNEFDSFRKRVDEALIGLKVNVTHRKSSRKYIIGRLTPVNTRYVTFPNDNAKGWILSKDVSLLSFFRDKYGKDIVHKDIPCLDLGKGKKKNYVPMEFCILVDDQRYPKERLDGFAGKTLKAMSLAHPNERESAIQKMVQSSDGPCGGGVIHNFGMSVNKNMTSIVGRVIGPPELKLGDPTGKTIKITVDMEKCNWNLVGRSMVEGKPVERWGILDFTSFGSYRCKLKVNEFIQNLIGKYKKFGIDMREPIWYEESSMQILASNDSLSDLLQKINNICKYNQGPLQFLLCVMSKRSPGYKNLKWISETKVGIVTQCCLSNSANEGDDLFFTNLALKINAKLGGSNVELSNRLPYFEGEGYVMFVGADVNHPGSRDTRSPSIVAVVATVNWPAANRYAARVCPQYNRCEKILNFGEICLELVACYRRKNGVRPEKIVVFRDGVSEYEFDMVLNEELLDLKIAFERSNYFPTITVIVAQKRHQTRFFPEGWRDGSSSGNILPGTVVDTKVIHPFEFDFYLCSYYGSLGTSKPTHYHVLWDEHKFTSDELQKLIYEMCFTFARCTKPVSLVPPVYYADLAAYRGRLYHEARNGTLKSAAYSAPKGSSSVSPTASFEQGFYRLHADLENIMFFI* 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0574 971 SMART DUF1785_2 274 327 IPR014811 -
Lan4g0574 971 SMART Piwi_a_2 628 926 IPR003165 GO:0003676
Lan4g0574 971 Pfam PAZ domain 348 453 IPR003100 GO:0005515
Lan4g0574 971 MobiDBLite consensus disorder prediction 1 20 - -
Lan4g0574 971 CDD Piwi_ago-like 491 925 IPR045246 -
Lan4g0574 971 Gene3D - 699 971 IPR036397 GO:0003676
Lan4g0574 971 ProSiteProfiles Piwi domain profile. 628 927 IPR003165 GO:0003676
Lan4g0574 971 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 34 970 - -
Lan4g0574 971 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 34 970 - -
Lan4g0574 971 Pfam Argonaute linker 1 domain 276 326 IPR014811 -
Lan4g0574 971 CDD PAZ_argonaute_like 328 443 - -
Lan4g0574 971 Gene3D paz domain 322 448 - -
Lan4g0574 971 SUPERFAMILY PAZ domain 323 482 IPR036085 GO:0005515
Lan4g0574 971 Gene3D - 510 691 - -
Lan4g0574 971 Pfam Piwi domain 629 923 IPR003165 GO:0003676
Lan4g0574 971 SUPERFAMILY Ribonuclease H-like 611 927 IPR012337 -
Lan4g0574 971 MobiDBLite consensus disorder prediction 39 53 - -
Lan4g0574 971 ProSiteProfiles PAZ domain profile. 328 444 IPR003100 GO:0005515
Lan4g0574 971 MobiDBLite consensus disorder prediction 1 53 - -
Lan4g0574 971 Pfam N-terminal domain of argonaute 130 265 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0574 Lan-Chr4 8136068 8139740 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0574 132 960 Eukaryotic Initiation Factors Gene Family AT1G48410 35.135 6.73e-143 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0574 K11593 - gmx:100783571 1462.97