Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0562 ATGTATCATCCAAAGAGCTTTCCTAGTCAAAGTCTAATTAGAAGCAATTCATTAGTTCATGATCACCATATAGATTGTGGTGGCAGCACAATGGATCCTGGCAATGCAGGAAACAATCTCACCAACGATCCTAATCTCTCTTCAAAGCAACGTCTACGTTGGACGCATGAGCTTCATGAGCGCTTTGTGGATGCTGTGGCACAACTTGGTGGACCAGATCGTGCCACACCCAAAGGGGTCCTCAGAGTTATGGGTGTTCAAGGCTTAACAATTTACCATGTCAAAAGCCATTTACAGAAATATCGTCTGGCAAAATACCTACCTGACTCCTCACCCGATGTGTTGATAGAAGGAAAAACTGCTGACAAGAAAGAAACAGGGGATAGGCTTTCCAACCTTGATAGTTCATCCGGGATGCAGATTACTGAAGCACTAAAGCTTCAAATGGAGGTGCAGAAGCGACTACATGAACAATTGGAGGTGCAGAGACAGCTACAATTACGAATCGAAGCTCAGGGTAAATACTTGAAAAAGATAATTGAAGAGCAACATCGTCTCAGTGGGGTTCTTTCAGCAGATGAACCTGGCTCTGGAGTCGCACCCTCAGCTCAAGGAGGTGCGTGCCACGAACATGATAACAAGACTGACCCGGCAACCCCTGACCCAGAAAAGGCTGCCAAAGATCATGCCCCGGCAAAGAGTCTATCAAATGAATCTTTTTCATCTCACCATGAACCACTGACACCAGATTCTGACTGCCACATTGGTTCCCCAGCTGAGAGCCCTAAAGGGGAGAGATCAACCAAGAAGCAAAGGGTGAGCATGGAGGAAGCAGCATATTCTAAATCAGATATGGTGCTTCCACATCAGATACTGGAGTCAAGCATGTCATCATACCAGCAGCCGAATACTGTTTTCCTTTGCCAAGAGCAATTTGACCCTTCATTGAGGGGTATATCTAGCAGAAATGGTGAGGAGTTGGAGAAGTAA 990 0.4576 MYHPKSFPSQSLIRSNSLVHDHHIDCGGSTMDPGNAGNNLTNDPNLSSKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSPDVLIEGKTADKKETGDRLSNLDSSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQHRLSGVLSADEPGSGVAPSAQGGACHEHDNKTDPATPDPEKAAKDHAPAKSLSNESFSSHHEPLTPDSDCHIGSPAESPKGERSTKKQRVSMEEAAYSKSDMVLPHQILESSMSSYQQPNTVFLCQEQFDPSLRGISSRNGEELEK* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0562 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Lan4g0562 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 323 IPR044848 GO:0003700
Lan4g0562 329 MobiDBLite consensus disorder prediction 209 231 - -
Lan4g0562 329 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Lan4g0562 329 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Lan4g0562 329 Coils Coil 142 162 - -
Lan4g0562 329 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 3 323 - -
Lan4g0562 329 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Lan4g0562 329 Pfam MYB-CC type transfactor, LHEQLE motif 139 185 IPR025756 -
Lan4g0562 329 Gene3D - 48 107 - -
Lan4g0562 329 MobiDBLite consensus disorder prediction 263 277 - -
Lan4g0562 329 MobiDBLite consensus disorder prediction 190 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0562 Lan-Chr4 8045629 8050145 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0562 84 313 G2-like Transcription Factor Family AT2G01060 60.643 1.67e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan4g0562 Myb_DNA-binding 2.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0562 - - lang:109334185 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0562 4 8045629 8050145 Lan19g0751 19 13921080 13926310 LSH