Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0560 ATGTTCCCGAGAATGATACACCCCATTGAAGATGTTGAAGGTGATGGTGGGTCCAACTTCTCTCACAATCACAAGGGAGATCCATGTCTTGTTCTCACTGCTGATCCAAAACCTCGCCTTCGTTGGACTCAGGACCTTCATGAACGGTTCATTGATGCTGTCACTCAGCTTGGAGGTGCTAACAAAGCTACACCAAAAGCAATCATGCGGACTATGAATGTCAAGGGTTTGACTCTATTCCATTTAAAGAGTCATCTTCAGAAATACAGATTAGGCAAGCAATCAGGCAAAGATATCGGTGATGCATGCAAAGACGGAATGTCAGGCTCATATCTTCTAGAAAGCCCTAGTAATGGTAACTCTTCTCCGAAGTTGCCAACTTCTGATACAAACGAGGGTTATGAAATCAAGGAGGCATTGAGAGCACAGATGGAAGTGCAAAGTAAACTACATTTGCAAGTAGAGGCGGAGAGGCACGTGCAGATTCGCCAGGATGCAGAGCAGAGATACATGGTCATGCTTGAAAGAGCTTGTAAGATGCTGGCTGATCAATTTATAAGTGCTAGTGTTATAGACACCGATAGCCAAAAGTTTCGAGGAATTGAAAGTAAAGCACCAAGAGATCCCATGGTTGATGCTATTGGTTTTTACTCCTTGCCATCTTCTGAGGTGGCCAGAGTGCATATCCCAGAAGAAGAAATACCACCGAGTCTGCCACCCCAACGGGGTGATTGTTCAACCGAAAGTTCTCTAACTTCACACGAGACGTCCGGAGGAATAGGTTTAGAAGGAACTCCTGGTGGCGGAAAAAGAAGGATGTCGGGCATGGAGTCGATGGCAGCAGCACCTTTGATATGGAGTGAAGCTAAGATTAGAACTCAAGCCGTCAATGTAACTCAAGGTAATTTTCATGGAACGACTAGGTATGGCATGTAA 936 0.4509 MFPRMIHPIEDVEGDGGSNFSHNHKGDPCLVLTADPKPRLRWTQDLHERFIDAVTQLGGANKATPKAIMRTMNVKGLTLFHLKSHLQKYRLGKQSGKDIGDACKDGMSGSYLLESPSNGNSSPKLPTSDTNEGYEIKEALRAQMEVQSKLHLQVEAERHVQIRQDAEQRYMVMLERACKMLADQFISASVIDTDSQKFRGIESKAPRDPMVDAIGFYSLPSSEVARVHIPEEEIPPSLPPQRGDCSTESSLTSHETSGGIGLEGTPGGGKRRMSGMESMAAAPLIWSEAKIRTQAVNVTQGNFHGTTRYGM* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0560 311 SUPERFAMILY Homeodomain-like 37 93 IPR009057 -
Lan4g0560 311 Pfam Myb-like DNA-binding domain 40 90 IPR001005 -
Lan4g0560 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 94 IPR017930 -
Lan4g0560 311 MobiDBLite consensus disorder prediction 111 129 - -
Lan4g0560 311 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 37 92 IPR006447 GO:0003677
Lan4g0560 311 Gene3D - 36 94 - -
Lan4g0560 311 MobiDBLite consensus disorder prediction 232 274 - -
Lan4g0560 311 MobiDBLite consensus disorder prediction 110 130 - -
Lan4g0560 311 Pfam MYB-CC type transfactor, LHEQLE motif 135 180 IPR025756 -
Lan4g0560 311 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 2 311 - -
Lan4g0560 311 MobiDBLite consensus disorder prediction 242 259 - -
Lan4g0560 311 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 311 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0560 Lan-Chr4 8039066 8043573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0560 23 253 G2-like Transcription Factor Family AT3G24120 46.281 1.69e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan4g0560 Myb_DNA-binding 2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0560 - - lang:109329801 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0560 4 8039066 8043573 Lan19g0750 19 13913300 13918001 LSH
Lan4g0560 4 8039066 8043573 Lan16g0315 16 2545409 2548922 LSH