Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0549 ATGCTCAGCCATGGATTTTTCCAATCTGATCTCAATTTAAACTCTTTAGCATATCCGATGGACTCGAAGACTAGTGCTAGAGCTCTTCCAAAACAGCAGCAGAAGACGGCTGGGATTGAACCCCTTGAGGCAAAAGGCATCAGGCATCCTTCAGTGCTGGTTTTGAAGGCAGGTAGACCTGAGCCCGATGCCTGTGAAGATAAATCGAAGACTGTGCAAAATTCGTCAAGGCAGAATACTGTGGAAATTCCTGACATCAACAAGTTAGAAATTTCAGCCCAAAAGGGGTCTGCTTCCTCATCCGTCCTCGACAAAGAAGTGGTTCGAACTGTCATCGAGAACACAGGCTCACAGGAAAAATCTATTGACCAGGACAAAAAGACACTGGGATATGGAAGCGTGAAGAATAGTTCTGTTTCCGCTAAAGTTAGTGATGGGGCCAGCAGTCTTGCAAAGACAAGTGGAAGTGCTAAGATCAGTGACCGAGCTGATTTTGTTGAGAGTGGCAAGAGCAGTATTTGCAGAGGAAGTACAAGCAGTGATGTGAGTGATGAGAGTACATGTAGTAGCTTTAGTAGCAGCATAAACAAGCCTCACAAGGCAAATGACATGAGATGGGAAGCTATCCAAGTTGTTCGAACAAGAGATGGGATGCTGGGTTTAGGTCACTTTAGACTGCTGAAGAGGTTGGGCTGTGGAGATATCGGCAGTGTATATCTCTCTGAGTTGAGTGGAACTAAATGTTACTTTGCAATAAAGGTGATGGACAAAGGGTCCCTAGCAAGTCGCAAAAAGCTACTTCGTGCTCAGACAGAAAGAGAAATTCTGCAGTTACTTGACCACCCCTTTCTTCCAACTTTGTATACCCATTTTGAGACAGAGAAATTCTCATGCTTGGTAATGGAATTCTGCCCTGGTGGAGACCTCCATACTCTTAGGCAGAAGCAATCAGGGAAGCATTTTCCCGAGCAGGCAGTGAAGTTTTATGTGGCAGAGGTCCTACTGGCTATGGAGTACCTCCACATGCTTGGAATTGTCTACCGTGATCTGAAGCCCGAAAATGTCCTTGTTAGAGATGATGGACATATTATGCTCTCTGACTTTGACCTTTCCCTCCGTTGTGCGGTTAGCCCAACCCTGGTAAAAAGCACAGCCATGGATTCAGAGACTTTAAGAAAGAATACAGCATATTGTGCCCAGCCTGCATGTATTCAGCCACCTTCCTGTATCCAGCCATCGTGTGTTGCTCCTACCACATGCTTTTCACCACGTCTCTTCTCTAGCAAATCAAAGAAAGACCGCAAGCCCAAAAATGAAATCGGCAACCAAGTGAGTCCATTACCTGAGCTCGTCGCTGAGCCTACCGATGCTCGGTCAATGTCATTTGTTGGAACTCATGAATACTTGGCACCTGAGATCATTAAGGGTGAAGGTCATGGGAGTGCAGTTGATTGGTGGACGTTTGGAATCTTTCTATATGAGCTGTTGTTCGGTAAGACTCCTTTTAAAGGATCTGGAAACCGAGCAACGTTGTTCAATGTTGTAGGTCAGCCGCTGCGATTTCCAGAAGCACCTGTTGTCAGTTTTGCAGCAAGGGATCTTATAAGGGGGTTGCTTGTAAAGGAACCTCAGCACAGATTGGCATATAAAAGAGGTGCTACTGAAATTAAGCAACATCCCTTTTTTGAAGGTGTGAATTGGGCATTGATCCGTTGTGCTACGCCACCCGAGATCCCAAAGCATGTAGAGTTTGAGAAGATACCTTCCGCAGCATCACCAGCTGTTGAAAAAGCTGTTAATCCTAAGTCGATAGCTAAGAATCAGAAAGGTTCTGATAATTATCTGGAGTTTGATTTCTTCTAG 1863 0.452 MLSHGFFQSDLNLNSLAYPMDSKTSARALPKQQQKTAGIEPLEAKGIRHPSVLVLKAGRPEPDACEDKSKTVQNSSRQNTVEIPDINKLEISAQKGSASSSVLDKEVVRTVIENTGSQEKSIDQDKKTLGYGSVKNSSVSAKVSDGASSLAKTSGSAKISDRADFVESGKSSICRGSTSSDVSDESTCSSFSSSINKPHKANDMRWEAIQVVRTRDGMLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAIKVMDKGSLASRKKLLRAQTEREILQLLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQKQSGKHFPEQAVKFYVAEVLLAMEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSTAMDSETLRKNTAYCAQPACIQPPSCIQPSCVAPTTCFSPRLFSSKSKKDRKPKNEIGNQVSPLPELVAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKHVEFEKIPSAASPAVEKAVNPKSIAKNQKGSDNYLEFDFF* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0549 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 345 357 IPR008271 GO:0004672|GO:0006468
Lan4g0549 620 MobiDBLite consensus disorder prediction 428 448 - -
Lan4g0549 620 Pfam Protein kinase domain 459 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0549 620 Pfam Protein kinase domain 225 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0549 620 PANTHER FLIPPASE KINASE 1-RELATED 22 620 - -
Lan4g0549 620 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 22 620 - -
Lan4g0549 620 SUPERFAMILY Protein kinase-like (PK-like) 197 583 IPR011009 -
Lan4g0549 620 SMART serkin_6 224 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0549 620 Gene3D Transferase(Phosphotransferase) domain 1 311 579 - -
Lan4g0549 620 ProSiteProfiles Protein kinase domain profile. 224 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0549 620 MobiDBLite consensus disorder prediction 60 81 - -
Lan4g0549 620 CDD STKc_phototropin_like 223 580 - -
Lan4g0549 620 Gene3D Phosphorylase Kinase; domain 1 217 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0549 Lan-Chr4 7960533 7964783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0549 81 620 AGC Kinase Gene Family AT5G47750 80.147 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lan4g0549 Pkinase 2.5e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0549 K08286 - gmx:100781600 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0549 4 7960533 7964783 Lan19g0738 19 13791475 13795647 LSH
Lan4g0549 4 7960533 7964783 Lan16g0326 16 2641625 2645953 LSH