Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0544 ATGGGTGACTCAGACAATGAATCAGGAGGAGGTAAAGTTTCAGGTAATAATAGAAGTGGAAGCAATGAATTGAGAGGGTGCAGAGAACAAGATAGGTACCTTCCAATAGCCAACGTTAGCAGGATCATGAAGAAGTCCTTACCAGCCAACGCAAAGATCTCAAAGGAAGCAAAAGAAACAGTGCAAGAATGTGTATCAGAGTTCATTAGCTTCATAACAGGAGAAGCTTCAGATAAGTGTCAGAAAGAGAAGAGAAAGACAATCAATGGTGATGATTTGTTGTGGGCCATGACTACCCTTGGTTTTGAAGGGTATGTGGACCCACTGAAGGGATACTTGCAAAAGTATAGGGATATGGAAGGGGACAAGAGTGGCTTGATGGGTGGGAGTGGGAGGGAGCAAAGTGAAGGTGGTGGAAGTTATGGTCAAGGTCAAGGTAGTATGATATCATACCCTATCATGATGACTATGGGGAATCACCATCAAGGACACATGTATGGATCTGGTACTAGTGGATCACCTTCTTCTACAAGAAATAGATAG 543 0.4309 MGDSDNESGGGKVSGNNRSGSNELRGCREQDRYLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEGYVDPLKGYLQKYRDMEGDKSGLMGGSGREQSEGGGSYGQGQGSMISYPIMMTMGNHHQGHMYGSGTSGSPSSTRNR* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0544 180 MobiDBLite consensus disorder prediction 9 23 - -
Lan4g0544 180 SUPERFAMILY Histone-fold 30 136 IPR009072 GO:0046982
Lan4g0544 180 ProSitePatterns NF-YB/HAP3 subunit signature. 64 80 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lan4g0544 180 MobiDBLite consensus disorder prediction 160 180 - -
Lan4g0544 180 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 164 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lan4g0544 180 MobiDBLite consensus disorder prediction 1 27 - -
Lan4g0544 180 MobiDBLite consensus disorder prediction 163 180 - -
Lan4g0544 180 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 164 - -
Lan4g0544 180 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 33 97 IPR003958 -
Lan4g0544 180 Gene3D Histone, subunit A 23 143 IPR009072 GO:0046982
Lan4g0544 180 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Lan4g0544 180 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Lan4g0544 180 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Lan4g0544 180 MobiDBLite consensus disorder prediction 123 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0544 Lan-Chr4 7916999 7917605 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0544 1 131 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.573 1.06e-67 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lan4g0544 CBFD_NFYB_HMF 3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0544 K08065 - gmx:100305641 222.246