Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0541 ATGGGGAATGTTAATGACAGAGAAGAAGATTTCAATGTTACTCCTCCTACACAACCTCAACAAAATGAAGAACAAGAAGAATGTGAGAGTGTTGTGCTTTCTGAGTTGATGGGTCAAGATCCACCACCTAGCCCTAGAGCTACCCATTCTCCATTCATCTTCACCCCTCAAGTACCAGTGGTTCCACTACAAAGACCTGATGAGATGCATGTTCCAAGTCCTTCCTGGATGCAAACTAGTTCAGGGTATGAAGATATGTACAATGAACTAGGAATTCCAACAATGATTACTTGGAGTTATGGAGGGAAAGAAGTAGCTGTGGAGGGATCATGGGATCATTGGAAAACAAGAATACTCTTGCAAAGATCGGGGAAGGACTTCACAATAATGAAGGTACTGCCATCTGGTGTTTACCAGTTCAGATTCATCATTGATGGACAGTGGAGGTACGCACCTGACTTGCCCTGGGCCCAAGACGAGGCTGGGAATGCTTACAACATTCTGGACCTACAGGATTCTGTTCCTGAAGATATTGGAAGCATTTCTAGTTTTGAACCTCCTAAATCACCAGAGTCTAGTTATAACAACCTACAACTCAGTTCTGAAGATTATGCAAAGGAGCCACCATTGGTTCCTCCATACTTGCAAATGACACTTCTTAATGTTCCTTCAACAAATATGGAAATCCAGCCTCCTATATCAAGACCACAGCATGTAATGCTCAATCATCTCTACATGCAGAAAGAAAAGGGTAGCCCTTCAGTCGTTGCACTCGGTACAACGCATCGGTTCTTAGCCAAATACGTCACTGTGGTGCTGTACAAGTCTTTGCAGAGGTAA 840 0.4333 MGNVNDREEDFNVTPPTQPQQNEEQEECESVVLSELMGQDPPPSPRATHSPFIFTPQVPVVPLQRPDEMHVPSPSWMQTSSGYEDMYNELGIPTMITWSYGGKEVAVEGSWDHWKTRILLQRSGKDFTIMKVLPSGVYQFRFIIDGQWRYAPDLPWAQDEAGNAYNILDLQDSVPEDIGSISSFEPPKSPESSYNNLQLSSEDYAKEPPLVPPYLQMTLLNVPSTNMEIQPPISRPQHVMLNHLYMQKEKGSPSVVALGTTHRFLAKYVTVVLYKSLQR* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0541 279 CDD E_set_AMPKbeta_like_N 93 169 - -
Lan4g0541 279 Gene3D - 180 277 - -
Lan4g0541 279 Pfam Glycogen recognition site of AMP-activated protein kinase 92 172 IPR032640 -
Lan4g0541 279 MobiDBLite consensus disorder prediction 1 47 - -
Lan4g0541 279 SMART AMPKBI_2 187 277 IPR006828 GO:0005515
Lan4g0541 279 MobiDBLite consensus disorder prediction 10 27 - -
Lan4g0541 279 SUPERFAMILY E set domains 92 171 IPR014756 -
Lan4g0541 279 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 205 275 IPR006828 GO:0005515
Lan4g0541 279 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 279 IPR043554 -
Lan4g0541 279 Gene3D Immunoglobulins 86 174 IPR013783 -
Lan4g0541 279 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2 1 279 - -
Lan4g0541 279 SUPERFAMILY AMPKBI-like 174 276 IPR037256 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0541 Lan-Chr4 7905741 7908784 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0541 K07199 - gmx:100777497 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0541 4 7905741 7908784 Lan16g0334 16 2705332 2708610 LSH