Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0526 ATGGAAATGGACTCCAGCAAACTTTTTATTGGAGGGATTTCCTGGGACACAAATGAAGACCGACTCAGACAGTATTTCCAGAATTTTGGAGATGTTGTGGAAGCTATGATAATGAAGGATCGGACCACGGGACGTGCCCGTGGTTTCGGGTTTATTGTTTTTGCTGATCCTTCTGTTGCTGAGAGAGTTGTTTTGGAAAAGCATGTCATAGATGGAAGAACTGTTGAAGCAAAAAAGGCCGTCCCTAGAGATGATCAGAATCTTCTGAACAGAACAAACAATAGCAGTCATGGGTCTCCTGGTCCTACTCCTACCCGCTCAAAGAAGATATTTATGTTGTCGTGA 345 0.4348 MEMDSSKLFIGGISWDTNEDRLRQYFQNFGDVVEAMIMKDRTTGRARGFGFIVFADPSVAERVVLEKHVIDGRTVEAKKAVPRDDQNLLNRTNNSSHGSPGPTPTRSKKIFMLS* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0526 114 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 112 - -
Lan4g0526 114 MobiDBLite consensus disorder prediction 86 103 - -
Lan4g0526 114 Gene3D - 3 88 IPR012677 -
Lan4g0526 114 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lan4g0526 114 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Lan4g0526 114 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 112 - -
Lan4g0526 114 SUPERFAMILY RNA-binding domain, RBD 3 102 IPR035979 GO:0003676
Lan4g0526 114 MobiDBLite consensus disorder prediction 81 114 - -
Lan4g0526 114 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lan4g0526 114 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0526 Lan-Chr4 7822293 7824133 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0526 8 54 C2H2 Transcription Factor Family AT2G19380 36.170 7.99e-10 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0526 K14411 - jre:108993403 187.193