Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0521 ATGTCTGTGATCGAAACAACCAACGTTGATTTTTTCAATCAATGCAATCACTCCTCAAAGCACATATTCGACGATTGTGTTCCCATTATCGACGACTGCGCCGTTGATTTCCAATTCCGGATGAAGAAAGACGAACCGAAAGCCGTGAATTCCACCTCCAACGCCGCAGTGATGTCCACCGAAGTCATCGATAGGGTTTCCAACGCGCGATCGGCGCCGTTAAATGTTTGCGCCGCTTCAAACTCCGAGTCGACTCGGTATAACTCGCGGTTACAGTTCTTCGTCAGAATGATTTCCAACACCGTTGTGATGCATGCGTGTCCGCAAGATAGTGTGAGATCGGTGCATGAGCGAATCGAAATGATTACTGGAATTCCGATTACGGAGCAGTGTTTTATATACAGAGGGAAACATCTTCGGTGGGAGCAGACTCTGTACGAATGCGCGATTGAAAGCGACGCGAGTGTTCAAATGGTTGGTCGTATGAGAAGTACGCTGCACCCGCGAGGTTGGCAAATAATGGAGGAAATGGTTTCAATGATTTTGCGTCTCTGCAGAGGAGAAATAATTCATTATTCTCTCCAAATCATCAAGGATTTGATGACTACTTATTTGAACCCGACTTGGAAGAAAATTAAGGACTATACGAAATTCGACAGCGAATATGCTACTTCGTATTTCAACATTTTCTTATCATCCAATGCTCATGGGCTTTTGGTTATGCTCTATATTTCATCCGGTCGAAGTTACAAGCAACTCGCAGATTTGGCTATTAAGCATTTCATGAGTTCATGTCAAACTATCATAAATAGAGCATTGCAATGTCAGCGTGCTCGTTTGGTCTTGGAATTCTGTAAGGTTCTCAAGAGAGTAGGGAGTGATGATCCTTTGTACATGTTCAGTCGAAATACTTTCATATCATTGTTGGAGACTGCTAAAGTTTCATATTGTTCTGTGAATGGTAAAGGGAATCTCTTGCTTCAAGATATTTCGCCCTTTGTTCGTGAGCTTGCGGATAAATTGTTGAGGGATTTGGATTTGAGTAAGGTAGTCCCCCTCTGTTTGGGGCCGTTGATCAATGATGTGAGGGATTTTTCTGCATTCTTGGTCCCTATGAGGAAGGGAATCAACGAGCTGCAAACATCGAAGGATTCAAGCAAAATCAAAGAGCTGCATACTTTGAAGGGTTCTATAATTGATGATGAGAATCTCCATGAAGAGCTATTGCGTGCATCACTAGAGGCTGATAACCTTCATCTCATATTTATTCAGCTGTTGAGAAAAATGGGCGAGTGCCTTCACAACATGGAGGGATGCTTGGCTAACAAGGAAATCGGGGCAGGGGATTTTGTCTCTCCAGCATGGTCTCAGTATCTTTCCATCTTGAAGGAACTGTATCAAATCACTAAGCTCTATGATGGTACTGAAGATATGTTTTGGAGAGTACTGATGCCGCGAAGACGCATGGTGTGTCTACTAATTGTTAAATTTGCTAAGAGAACGGATGACCATCGTTGGATTCTTGATCACAAAGCTGTGACCGATTTTGAGTCTCGGAGGCATCTGGTGTTGATGCTTTTCCCCGGTGTAAGAGAAGACTTTGTGGAGCTGCATGAGATGCTTATTGACAGGTCTAAGTTATTTGCCGAGTCTTTTAACTACATAAAACAAGCAGAGGCTGCATCTCTTCGTGCTGGCCTATTTATGGAATTCAAAAACGAGGAAGCTACCGGACCAGGCGTACTGAGGGAGTGGTTTTATTTGGTTTGTCATGCAATATTTAATCCGCAAAATGTTCTCTTTTTGGCATGCCCAAATGACAGAAGGAGATTTTTCCCTAATCCTGCATCCAAGGTAGATCCTATGCACCTAGAGTACTTCAAGTTCTCTGGTCGTGTTATTGCATTAGCTCTGAAGCATAGAGTGCAAGTGGGTATTGTTTTAGATCGTGTGTTTGTCGTGCAATTGATGGGAAGGCGTATTACTTTAGAAGATATACAGGATGCAGATCCTTACTTTTATAGTAGTTGCAAGCAAATATTGGAGATGGATGCTGATTTCATTGATTCGGATGCATTAGGACTAACCTTTGCTACAGAGGTGGAGGAATTAGGACACAGGAAAGTGGTTGAGCTTTGCCGTGGAGGGGAACGCCGTGCAGTGAATAGTAAGAACAGGGAGAAGTATGTTAATCTTCTTATACAGAGCCGTTTTGGAATGTCCGTATTTCAGCAGGTATTTTATTTTGCCAAGGGTTTTGCTGATATACTCTCCGACTCAAAGCTCCGGCAGTTCTTCTTTCAAAGTTTAGAGCTCAAAGATCTTGATTGGATGCTGCATGGGAGTGAAAAAACCATCTCTGTTGAGGATTGGAAGGCTCATACAGAGTATAATGGCTATAAAGAGAGTGACCATCAGATATCTTGGTTTTGGGAGATTGTTGGGAGAATGTCAGCAGAACAAAGGAATATTCTCCTCTTCTTTTGGACATCTGTGAAACATTTACCAGTTGAAGGTTTCCGTGGTTTGGCCTCTCGTCTATACATCTATAAGTCCCTGGAACCTGATGATCACCTTCCTTCGTCTCACACATGCTTTTATAGGCTGTGTTTCCCAGCATATTCATCTAAGGCTATCATGCGAGATCGGTTTGGAATCATCACTCAAGAACACATTGGTTGCAGTTTTGGTACCTGGTGA 2700 0.4285 MSVIETTNVDFFNQCNHSSKHIFDDCVPIIDDCAVDFQFRMKKDEPKAVNSTSNAAVMSTEVIDRVSNARSAPLNVCAASNSESTRYNSRLQFFVRMISNTVVMHACPQDSVRSVHERIEMITGIPITEQCFIYRGKHLRWEQTLYECAIESDASVQMVGRMRSTLHPRGWQIMEEMVSMILRLCRGEIIHYSLQIIKDLMTTYLNPTWKKIKDYTKFDSEYATSYFNIFLSSNAHGLLVMLYISSGRSYKQLADLAIKHFMSSCQTIINRALQCQRARLVLEFCKVLKRVGSDDPLYMFSRNTFISLLETAKVSYCSVNGKGNLLLQDISPFVRELADKLLRDLDLSKVVPLCLGPLINDVRDFSAFLVPMRKGINELQTSKDSSKIKELHTLKGSIIDDENLHEELLRASLEADNLHLIFIQLLRKMGECLHNMEGCLANKEIGAGDFVSPAWSQYLSILKELYQITKLYDGTEDMFWRVLMPRRRMVCLLIVKFAKRTDDHRWILDHKAVTDFESRRHLVLMLFPGVREDFVELHEMLIDRSKLFAESFNYIKQAEAASLRAGLFMEFKNEEATGPGVLREWFYLVCHAIFNPQNVLFLACPNDRRRFFPNPASKVDPMHLEYFKFSGRVIALALKHRVQVGIVLDRVFVVQLMGRRITLEDIQDADPYFYSSCKQILEMDADFIDSDALGLTFATEVEELGHRKVVELCRGGERRAVNSKNREKYVNLLIQSRFGMSVFQQVFYFAKGFADILSDSKLRQFFFQSLELKDLDWMLHGSEKTISVEDWKAHTEYNGYKESDHQISWFWEIVGRMSAEQRNILLFFWTSVKHLPVEGFRGLASRLYIYKSLEPDDHLPSSHTCFYRLCFPAYSSKAIMRDRFGIITQEHIGCSFGTW* 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0521 899 Gene3D - 91 164 - -
Lan4g0521 899 CDD HECTc 538 897 IPR000569 GO:0004842
Lan4g0521 899 Gene3D Hect, E3 ligase catalytic domains 541 772 - -
Lan4g0521 899 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 78 897 - -
Lan4g0521 899 SUPERFAMILY Ubiquitin-like 82 164 IPR029071 -
Lan4g0521 899 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 78 897 - -
Lan4g0521 899 SMART hect_3 557 897 IPR000569 GO:0004842
Lan4g0521 899 Gene3D Hect, E3 ligase catalytic domain 782 897 - -
Lan4g0521 899 SUPERFAMILY Hect, E3 ligase catalytic domain 534 884 IPR035983 GO:0004842
Lan4g0521 899 SMART ubq_7 91 161 IPR000626 GO:0005515
Lan4g0521 899 Gene3D Hect, E3 ligase catalytic domain 659 741 - -
Lan4g0521 899 Pfam HECT-domain (ubiquitin-transferase) 588 889 IPR000569 GO:0004842
Lan4g0521 899 ProSiteProfiles Ubiquitin domain profile. 91 165 IPR000626 GO:0005515
Lan4g0521 899 Pfam Ubiquitin family 94 163 IPR000626 GO:0005515
Lan4g0521 899 ProSiteProfiles HECT domain profile. 559 899 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0521 Lan-Chr4 7796415 7800961 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0521 - - gmx:100789233 1099.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0521 4 7796415 7800961 Lan16g0352 16 3006479 3015724 LSH