Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0500 ATGGCGGAAAAGGCCGTTACCATCCGAACCCGAAAATTCATGACCAATAGGCTCCTATCAAGGAAGCAATTCATTATTGATGTTCTTCATCCAGGGAGGGCTAATGTGTCCAAGGCTGAACTGAAGGAGAAATTGGCTAGAATCTATGACGTGAAGGACCCCAACTCTGTGTTTGTGTTCAAGTTCAGAACTCACTTTGGTGGTGGTAAATCCACTGGTTTTGGTTTGATTTATGACTCTGTTGAAAATGCTAAGAAGTATGAGCCTAAGTACAGGCTTATCAGGAATGGACTTGATACCAAGATAGAAAAGTCCAGGAAGCAATTGAAGGAGAGAAAGAACAGAGCTAAGAAGATCCGTGGAGTTAAGAAGACCAAGGCAGCTGATGCTGCTAAGGCGGGAAAGAAGAAATGA 414 0.4324 MAEKAVTIRTRKFMTNRLLSRKQFIIDVLHPGRANVSKAELKEKLARIYDVKDPNSVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKIEKSRKQLKERKNRAKKIRGVKKTKAADAAKAGKKK* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0500 137 MobiDBLite consensus disorder prediction 107 137 - -
Lan4g0500 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Lan4g0500 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Lan4g0500 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 - -
Lan4g0500 137 Pfam Ribosomal protein S24e 26 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Lan4g0500 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Lan4g0500 137 Gene3D - 1 132 - -
Lan4g0500 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 137 IPR001976 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0500 Lan-Chr4 7589197 7591040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0500 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 87.879 3.42e-85 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0500 K02974 - pvy:116133712 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0500 4 7589197 7591040 Lan4g0500 4 7589197 7591040 ECH
Lan4g0500 4 7589197 7591040 Lan8g0285 8 4938139 4940285 PCT
Lan4g0500 4 7589197 7591040 Lan20g0689 20 5488786 5490496 PCT
Lan8g0285 8 4938139 4940285 Lan4g0500 4 7589197 7591040 PCT
Lan20g0689 20 5488786 5490496 Lan4g0500 4 7589197 7591040 PCT