Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0491 ATGACAAGTGTTGTGGAGGGAGAGAAATACAAGATGATAAACTTTGAAGAAACGGAGTTACGATTAGGGTTGCCTGGTGAATCAGCAGCAGTGAAGAACACTTGTAATACTAGTGGGAAAAGAGGTTTCTCAGATACGAATACTACTATGGATTTGAAGCTTAATCTTTCTTCTTCCAATAACCATGTGGTTATGGAAAAGGTGAAAGAGAATATTACTACTACTGCTAAATCTTCTCATCCGGTTCCTTGTGCTAATGACCCAGCAAAGCCACCTTCCAAGGCACAAGTGATAGGTTGGCCACCAGTTCGATCATACAGAAAGAACATAGTGAATAATGTTCAAAGGAACAACAATGATGAAGCTGAAAAGAAAGCCGCCACCACCGCCACCATAACCATGAATAATAGTGTCAATAATATTATAGGTGCTTTTGTGAAGGTGAGCATGGATGGTGCACCTTATCTACGCAAGGTGGATTTGAAGTTGTATAAGAGTTACCAAGAGTTGTCAGATGCACTGGTTAAAATGTTCAGCTCATTCACAATTGGCAAATGTGGGTCCCAAGGCATGAAGGACTTCATGAATGAGAATAAATTAATAGACCTTTTAAATGATTCTGATTATGTACCCACGTATGAAGATAAGGATGGTGATTGGATGCTAGTGGGTGATGTACCATGGGAAATGTTCGTTCAATCATGCATGCGCCTGCGCATAATGAAAGGTTCTGAGGCAATTGGGCTAGCACCAAGGGCAGTGGAAAAGTGCAAGAACAGAACCTGA 786 0.4097 MTSVVEGEKYKMINFEETELRLGLPGESAAVKNTCNTSGKRGFSDTNTTMDLKLNLSSSNNHVVMEKVKENITTTAKSSHPVPCANDPAKPPSKAQVIGWPPVRSYRKNIVNNVQRNNNDEAEKKAATTATITMNNSVNNIIGAFVKVSMDGAPYLRKVDLKLYKSYQELSDALVKMFSSFTIGKCGSQGMKDFMNENKLIDLLNDSDYVPTYEDKDGDWMLVGDVPWEMFVQSCMRLRIMKGSEAIGLAPRAVEKCKNRT* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0491 261 Pfam AUX/IAA family 17 252 IPR033389 -
Lan4g0491 261 Gene3D - 138 255 - -
Lan4g0491 261 SUPERFAMILY CAD & PB1 domains 144 242 - -
Lan4g0491 261 PANTHER AUXIN-INDUCED PROTEIN AUX28 10 254 - -
Lan4g0491 261 ProSiteProfiles PB1 domain profile. 143 243 IPR000270 GO:0005515
Lan4g0491 261 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 254 IPR003311 GO:0005634|GO:0006355
Lan4g0491 261 MobiDBLite consensus disorder prediction 74 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0491 Lan-Chr4 7438138 7441121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0491 147 245 B3 DNA Binding Superfamily AT3G61830 34.343 1.51e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan4g0491 AUX_IAA 3.5e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0491 K14484 - gmx:100796888 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0491 4 7438138 7441121 Lan4g0491 4 7438138 7441121 ECH
Lan4g1740 4 26078686 26083979 Lan4g0491 4 7438138 7441121 ECH