Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0479 ATGGAGAGAAAAACCGAGGATGAAGTGGTAGATATTGGGAGTGCTTCTAGTTGTTCTTTTAGTGATGATTCAGAGGATGAAGGATCTCTGTCTCCCGAAATAGATGACAAAGTGGATGTTGAGGAACCTTTGACTGAGAAAGAAATAGAGGACCTTATCTCTGAGTTGTTAGAAGTGGAGAGTAAGGCTGCAGAGGCCCAAGAAGCTCTTGAAGAGGAGTCTCTTACTAAAATAGAGAGTGAAGTTAGACAAGAACTGAAGCAAACTCTTCAGGGGGATGATTTGGAAACTGCTGTTGGTGATGAGATGATTACTTTAAAAGAAGAGTGGGAAGATGTTCTGGATAACCTTGAAACTGAAAGTGCCCACTTACTGGAACAACTTGATGGGGCTGGAGTTGATCTCTCAAGCCTTTATAAGTGGATTGAAAAAGAAGCTCCCAATGGTTGCTGCACTGAAGCATGGAAAAGAAGGAATCATTGGGTAGGGTCTCAGGCAACTGCTGAAATTGCCGAGTCAGTTGCTGTTGCTGAGAAGTATCTACAAGTAAACAGGCCTGTTAGGAGGAAGCATGGAAAATTATTGGAAGAGGGTGCTAGTGGCTTTCTCCAAAAAAAACTTTCTGACGAAACCCAGGAGCCCTTAAAGAAAGAAACGGAGGGTGATTGGGATCTGTTCAATAAAGTAATTTCTGATGGGAGTGGTGCTGATGCTTCATTTGGCAGTAACCATTGGGCTTCTGTTTATTTAGCCAGCACTCCACAACAAGCTGCAATCATGGGCCTCAAATTTCCTGGTGTTAATGAGGTTGAGGAGATTGATGATGTAGATGCCAGTTCTTCAGATCCATTTATTGCAGCTGCCATTGCAAATGAAAGAGAACTAGATCTTTCTGATGAACAAAGGAGACAATTTAAAAAGGTCAAAGAAGAGGATGATGCAATTGTTGATAAGAAGCTTCAAATCCGTTTGAAACGTAGGAGGCATCGAAAGAAAAGTAAACAGCATGAACTGTGCCCACCTGACCTAGTCATGGAGGACCACATATCATCTGTCGATCATTTTAGTGATGAGAAGAAAATGGTGTCTGACAATGAGAAGGCTGCTTTTTTGAATACAAAGAATGATACAATTGAAGGTTTTGATGCCAACTCTCATATTGACCAAGAAAAGCCTTTGAGTACCGCCGATTTGTCAGATCCCCTTAACTCGTCATTGGCTGATGTTGAAGAACAGAGGGGAACCAAGCGTCCCAATGATAGCAAGATTGATACTGATAATAAAAAGTGTCGGACTATTACTATAGACAGTGATGATGAAGCAGATGTCATTGAGGATAAGTTAGATTGCAATGCGAATACCATAAAGGATCAATCTGAGGTTAAAGAAGGTTTATGCAACAGAGGTGCTGATTCTCTTTCTGATAGTTTGGACGAGAAATTCTTTTGCACAATTTGTGATAATGTAGCCCTTGAAGTGCACTCACACCCTCTTTTGAAAGTGATTATTTGTGGGGATTGCAGTTTCTTAATGAAGGAAAAGATACATGCAAAGGACCTGGCCGACGACTGCTCTGAGTGTAACTGTGCATGGTGCGGAGGAAGCAGTGAATTAGTTATTTGTAAATTATGCAAGATATTATTTTGCACCAGCTGTATAAAGAAGAATCTTGGTGTAGATTTCCTTGATGAAGAAGCTCAGGCCACTGGCTGGGATTGTTGTTGTTGCCGTCCAAATGTTCTGCAAAGACTGTCATTGCAACTACAGAGAGCCACAGGGTCTGCTGATGTACTAGTTTCCAGTTCTGGTAGTGATTCCGATAATTCAGATGCAGGAATTAATGCTACAATCAGCTCTAAGCGAAGGCGTAAAAAGAAGATTCGGAGGATACTTGATGATACTGAATTAGGGGAGGAGACAAAAAGGAAAATTGCAATTGAAAAGGAGCGGCAGGAACGCCTAAAGTCCTTGCGAGTGCAGTTTTCTGCCTCCTCAAATGAGACGACCTCTGCTGGTTGTAATGGGAATTTATCTGAAGGTGCAAGCATTGAAGTTCTTGGTGATGTGATAGCAGGTTACATAGTGAATGTTGTGAGGGAGAAAGGTGAAGAAGCTGTCAGAATTCCCCCTAGCATCTCAGCTAAACTGAAGGCCCATCAGGTTACTGGAATAAGATTTATGTGGGAAAATATTATACAGTCCATCAGAAAAGTGAAGTCTGGAGATAAAGGTCTTGGCTGTATTCTAGCTCATACCATGGGCCTCGGTAAAACTTTTCAGGTGATAGCTTTCTTGTACACTGCAATGAGAAGTGTTGATTTGGGGTTAAGAACTGCACTTATTGTCACACCCGTCAACGTTTTGCATAATTGGCGGCATGAATTCAACAAGTGGAGACCTTCAGAATTAAAGCCACTCAAGGTTTTCATGCTGGAAGATGTACCAAGAGATAGGAGGGCAGAATTGCTTGCGAAGTGGAGAGCTAAAGGTGGTGTCTTTTTGATTGGCTATTCTGCTTTCCGGAATTTGTCTTTTGGAAAGCATGTGAAAGATCGGCATGTGGCCCGAGATATTTGCCATGCTTTGCAGGATGGACCAGACATTCTTGTTTGTGATGAAGCCCATATGATAAAAAATACGAAAGCTGATGTAACTCAAGCCTTGAAACAAGTAAAATCTCAGAGGAGAATTGCGCTGACTGGATCACCTCTTCAAAACAATCTCATGGAATACTACTGTATGGTTGATTTTGTAAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTAGGAACCGCTTCCAAAACCCTATAGAGAATGGTCAACACACTAATTCAACTCTAATTGATGTGAAAATTATGAACCAAAGATCCCATATCCTCTATGAACAGTTGAAAGGCTTTGTCCAAAGAATGGACATGAATGTGGTGAAGAAGGATCTACCACCTAAAACTGTGTTTGTGATAACTGTCAAGCTCTCTCCCTTACAGAGAACATTGTACAAGAAATTCCTTGATGTGCATGGGTTCACCAAGGACAGGGAGCCTCATGAAAAGCTAAGAAAGAGAAGTTTTTTTGCGGGGTACCAGGCATTAGCTCGGATATGGAATCACCCTGGGATCTTGCAATTGACTAAAGAGGACAAGGAATATGTAAAACATGAAGATCCGGTTGAGAATTTTCTTGTGGATGATAGCTCCAGTGATGATAATTCTGACTGTAATCTGCTTGCTGGAGAGAAGATTAAGCATGCAAATGAGTCGATGCAGAAGAAAAATAATACTGGCTTTTTCCTGAAGGGTTGGTGGAATGATCTTCTTCATGGAAAGATCTATAAAGAGATTGATCAAAGTGGCAAAATGGTTTTGTTGATTGAGATACTAACCATGAGTTCTGATGTGGGTGATAAGGTGTTAGTTTTCAGTCAGAGCATACCAACCCTAGACCTAATAGAACTTTATCTCTCAGGGATGCCTAGACGTGGCAAACGAGGGAAGTTTTGGAAGAAGGGTAAAGACTGGTATAGGCTGGATGGAAGAACAGAGAGCTCTGAAAGGCAGAAACTTGTTGAGAGATTTAACGAGCCTTCGAATAGGAGGGTAAAATGCACTTTGATTTCAACTCGAGCAGGTTCTTTGGGTATTAATCTTCATTCAGCTAACCGTGTTGTTATAGTTGATGGTTCTTGGAATCCCACATATGATCTCCAGGCTATCTATCGAGCATGGAGGTATGGGCAGAGGAAGCCTGTGTTTGCCTACCGGTTGCTGGCTCATGGAACCATGGAAGAGAAAATATATAAGCGTCAGGTAACAAAGGAGGGGCTTGCTGCTAGAGTGGTTGATAGGCAACAGGTGCATAGGACTATATCTAAAGAAGAGATGTTACATCTCTTTGAGTTTGGTGATGATGAGAATCCTGAGACTTTGGTTGAGCTGAGTGAAGAAAATGGGCAGACACTGAAACATACAGTACCACATTCAAATGGAAGCAGTAATTCCGATAAGCTAATGGAAAGCTTGCTTGGCAAGCATCATCCACGGTGGATTGCCAATTATCACGAACACGAAACCCTGTTACAAGAAAATGAAGATGAAAAGCTATCAAAAGAGGAGCAAGATATGGCTTGGGAGGTGTATCGTAAATCACTGCAATCAGAATGGGAAGAAGTGCAGAGAGTACCACTTGCTGAGTCTATGGCAGTTCAAAAGCCAGAAATACCAAAAACAGAACCATTTGTTGTATCAGATCCACTAACCATTGTAAAAAATAAGCTAAGGAATCGTTTCTTCACCCGAAAGTGCACCAAACTTGTGCATATCCTTACGCTTCGAAGTCAGAGCGTAAAACGTGGTTGCAGTACAATTTGCGGGGAATGCGCCCAGGAGATAAGGTGGGAAGAGGTGTTGAATAAAGATGGAAGCGTGGCAAGGTGA 4434 0.4179 MERKTEDEVVDIGSASSCSFSDDSEDEGSLSPEIDDKVDVEEPLTEKEIEDLISELLEVESKAAEAQEALEEESLTKIESEVRQELKQTLQGDDLETAVGDEMITLKEEWEDVLDNLETESAHLLEQLDGAGVDLSSLYKWIEKEAPNGCCTEAWKRRNHWVGSQATAEIAESVAVAEKYLQVNRPVRRKHGKLLEEGASGFLQKKLSDETQEPLKKETEGDWDLFNKVISDGSGADASFGSNHWASVYLASTPQQAAIMGLKFPGVNEVEEIDDVDASSSDPFIAAAIANERELDLSDEQRRQFKKVKEEDDAIVDKKLQIRLKRRRHRKKSKQHELCPPDLVMEDHISSVDHFSDEKKMVSDNEKAAFLNTKNDTIEGFDANSHIDQEKPLSTADLSDPLNSSLADVEEQRGTKRPNDSKIDTDNKKCRTITIDSDDEADVIEDKLDCNANTIKDQSEVKEGLCNRGADSLSDSLDEKFFCTICDNVALEVHSHPLLKVIICGDCSFLMKEKIHAKDLADDCSECNCAWCGGSSELVICKLCKILFCTSCIKKNLGVDFLDEEAQATGWDCCCCRPNVLQRLSLQLQRATGSADVLVSSSGSDSDNSDAGINATISSKRRRKKKIRRILDDTELGEETKRKIAIEKERQERLKSLRVQFSASSNETTSAGCNGNLSEGASIEVLGDVIAGYIVNVVREKGEEAVRIPPSISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGLRTALIVTPVNVLHNWRHEFNKWRPSELKPLKVFMLEDVPRDRRAELLAKWRAKGGVFLIGYSAFRNLSFGKHVKDRHVARDICHALQDGPDILVCDEAHMIKNTKADVTQALKQVKSQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLIDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRTLYKKFLDVHGFTKDREPHEKLRKRSFFAGYQALARIWNHPGILQLTKEDKEYVKHEDPVENFLVDDSSSDDNSDCNLLAGEKIKHANESMQKKNNTGFFLKGWWNDLLHGKIYKEIDQSGKMVLLIEILTMSSDVGDKVLVFSQSIPTLDLIELYLSGMPRRGKRGKFWKKGKDWYRLDGRTESSERQKLVERFNEPSNRRVKCTLISTRAGSLGINLHSANRVVIVDGSWNPTYDLQAIYRAWRYGQRKPVFAYRLLAHGTMEEKIYKRQVTKEGLAARVVDRQQVHRTISKEEMLHLFEFGDDENPETLVELSEENGQTLKHTVPHSNGSSNSDKLMESLLGKHHPRWIANYHEHETLLQENEDEKLSKEEQDMAWEVYRKSLQSEWEEVQRVPLAESMAVQKPEIPKTEPFVVSDPLTIVKNKLRNRFFTRKCTKLVHILTLRSQSVKRGCSTICGECAQEIRWEEVLNKDGSVAR* 1478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0479 1477 Coils Coil 1352 1372 - -
Lan4g0479 1477 Pfam SNF2-related domain 739 1040 IPR000330 GO:0005524|GO:0140658
Lan4g0479 1477 MobiDBLite consensus disorder prediction 1 43 - -
Lan4g0479 1477 Pfam Helicase conserved C-terminal domain 1120 1245 IPR001650 -
Lan4g0479 1477 MobiDBLite consensus disorder prediction 393 409 - -
Lan4g0479 1477 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1122 1293 IPR001650 -
Lan4g0479 1477 CDD ADDz_ATRX 479 578 - -
Lan4g0479 1477 SMART ultradead3 712 933 IPR014001 -
Lan4g0479 1477 Gene3D - 688 970 IPR038718 -
Lan4g0479 1477 Coils Coil 107 127 - -
Lan4g0479 1477 SMART helicmild6 1148 1245 IPR001650 -
Lan4g0479 1477 MobiDBLite consensus disorder prediction 410 425 - -
Lan4g0479 1477 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 738 921 IPR014001 -
Lan4g0479 1477 CDD SF2_C_SNF 1113 1256 - -
Lan4g0479 1477 Gene3D - 981 1329 IPR027417 -
Lan4g0479 1477 MobiDBLite consensus disorder prediction 393 425 - -
Lan4g0479 1477 PANTHER RAD54-LIKE 35 1473 - -
Lan4g0479 1477 ProSiteProfiles ADD domain profile. 471 604 IPR025766 -
Lan4g0479 1477 PANTHER RAD54-LIKE 35 1473 IPR044574 GO:0016887
Lan4g0479 1477 Coils Coil 49 76 - -
Lan4g0479 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 976 1308 IPR027417 -
Lan4g0479 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 702 970 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0479 Lan-Chr4 7188016 7219739 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0479 746 1298 RAD5 or RAD16-like Gene Family AT5G43530 24.171 6.54e-31 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan4g0479 SNF2_N 1.2e-52 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0479 K10779 - gmx:100818409 2268.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0479 4 7188016 7219739 Lan4g0479 4 7188016 7219739 ECH