Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0477 ATGTTGTTGACAAACACCTATTTCCTCTCTAGATTATTCTTTGAAGCAGGAACAACTGTTTTTCCCAAAAAACATGGTCAAACAAAGCTGATCCTCTTAGGAGCTTCAAGAGTTATGCCTTCTTCATCTTATCCTGTTATTCCTACTTCACCAGTGAAGGCTGCATCGATGAATTCCAACATCAGAAGTGCAGGACACATGCTATCAAATCGTGCCGAATGCCGTGATGGCATCCCCTTTTCACCAGTCTCAGAAATACACTCTCCAGCATTCGTTTCTTACCCTCATGAAAGTGCTGATATTTTGTGGGATCAGTACCCGTTTCAGGATTTTATCGAGTTTCCTGATAGTATTCCCGTCCAGAACAATCAGGTGGAACATAATGCTTCTTACATATCTGGTGAAAATGCGCAAACAACTTATCTCGAGGAGTGGGCTGATGTTGATCAGTTACTGTCAGTCGATGATTCTCTTTTCCCAATTTGGGGTCAGTTTCTTGGTGATGATAATGTTGCAGAACCAAAGCCAGAGGAGACCAAGGTTTCACAGCAACAGCATGCACAATCTAAAGAAGTTAATGGTCTTCCTAACTCAGTGTCAACTGCACCACAAACGAAATCAAGAATGCGTTGGACTCCTGAACTTCACGAGGCCTTTGTCGAAGCAGTGAATCAGCTTGGTGGTAGTGAAAAGGCTACTCCAAAGGGTGTCTTGAAGCTGATGAAAGTTGAAGGCCTTACCATCTATCATGTGAAAAGCCACCTACAGAAGTATAGAACTGCCAGATACAAACCCGAGCCGTCAGAAGGAAGTTCTGATAAAAAGTTAACCGAAGTCGAAGAAATGAAGTCTCTAGACTTAAAAACGAACAAGGGAATCACCGAAACACTACGATTGCAGATGGAACTCCAGAAGCGACTTCATGAACAACTTGAGATTCAAAGAGAGTTACAGATTCAAATTGAAAGCCAAGGGAAGCGTCTTCAGATGATGTTTGAGAAACAGATAGAGATGGAAAAACCTTCTTCTCCGATATCAAACACAGCAGCTGTGCTACCTTCTCCTATTGACCATTTAGAAACAATGAATGAGGATCATGAGAAAGTTCAAATATACCGTAGCACTAGCACTCCAGAAACCTTACCCGAAGAAAAGTCGAAAGACACAAGCACAAAACAAACGAGGGATTATGCTAAAGAGGCCGGCGAACATGAGCTGGGAGATGACCAGTTTGCTGCACCACTCTCAAAACGGGTGAAGAGTTTATGA 1269 0.4255 MLLTNTYFLSRLFFEAGTTVFPKKHGQTKLILLGASRVMPSSSYPVIPTSPVKAASMNSNIRSAGHMLSNRAECRDGIPFSPVSEIHSPAFVSYPHESADILWDQYPFQDFIEFPDSIPVQNNQVEHNASYISGENAQTTYLEEWADVDQLLSVDDSLFPIWGQFLGDDNVAEPKPEETKVSQQQHAQSKEVNGLPNSVSTAPQTKSRMRWTPELHEAFVEAVNQLGGSEKATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYKPEPSEGSSDKKLTEVEEMKSLDLKTNKGITETLRLQMELQKRLHEQLEIQRELQIQIESQGKRLQMMFEKQIEMEKPSSPISNTAAVLPSPIDHLETMNEDHEKVQIYRSTSTPETLPEEKSKDTSTKQTRDYAKEAGEHELGDDQFAAPLSKRVKSL* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0477 422 MobiDBLite consensus disorder prediction 380 411 - -
Lan4g0477 422 Gene3D - 205 264 - -
Lan4g0477 422 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 37 421 - -
Lan4g0477 422 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 37 421 IPR044848 GO:0003700
Lan4g0477 422 MobiDBLite consensus disorder prediction 170 206 - -
Lan4g0477 422 SUPERFAMILY Homeodomain-like 204 260 IPR009057 -
Lan4g0477 422 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 206 260 IPR006447 GO:0003677
Lan4g0477 422 MobiDBLite consensus disorder prediction 373 422 - -
Lan4g0477 422 MobiDBLite consensus disorder prediction 181 206 - -
Lan4g0477 422 Pfam Myb-like DNA-binding domain 208 259 IPR001005 -
Lan4g0477 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 263 IPR017930 -
Lan4g0477 422 Pfam MYB-CC type transfactor, LHEQLE motif 293 337 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0477 Lan-Chr4 7173325 7176714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0477 16 340 G2-like Transcription Factor Family AT3G04450 42.815 8.81e-71 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan4g0477 Myb_DNA-binding 7.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0477 - - mtr:MTR_1g080330 429.869
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0477 4 7173325 7176714 Lan4g0477 4 7173325 7176714 ECH
Lan4g0477 4 7173325 7176714 Lan8g0263 8 4648250 4651566 PCT
Lan4g0477 4 7173325 7176714 Lan20g1007 20 10816458 10824041 PCT