Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0470 ATGTGCACAACAACCCAATACGAATTGTGTGAAGAAATTGGTCGTGGTCGTTTTGGCACCATTTACCGTTGCTTCGATATAACAACCAACGAAATCTACGCTTGCAAAATCATCAACAAAACCGTTTTAACTGATTCAACTGATCGCGAGTGTCTTCAAAACGAACCCAAATACATGACCCTTCTCTCTCCTCACCCTAACATCCTCCAAATCTATGACGTCAGCCAAGACGACGACGTTTTAACCATTGTAATGGAACTCTGTCAACCCCTAACCCTATTTGACAAAATCTTCCAAAACACTTTATCTGAGCCACAATCAGCTTCTGTAATGGTTCAGCTTATTTCAGCTATTAACCATTGTCACCGGCTCGGAGTGGCTCATCGTGATCTCAAACCAGACAACATCCTTTTCGATTCGATGGGTATTCTTAAATTGGGTGACTTTGGGTCTGCAGAGTGGTTTAGTGAGGAGAAGATGATGAGTGGGATCGTTGGGACGCCGTATTACGTGGCGCCGGAAATATTGATGGGGAGGGAGTATGATGAGAAAGTTGATGTTTGGAGTTGTGGTGTGATTTTGTATATGATGTTGGTTGGAATTCCACCGTTTTATGGTGATGATGCTGTTCAGATTTTTGAGGCTGTTGTTAGGGGTAATCTTAGGTTTCCTTCAAGGTTGTTTAGGTCTGTGTCTTCTTCTGCTAAGGATTTATTGAGGAATATGATTTGTAAGGATGCTTCTAGAAGGTTCTCTGCTCAACAAGTCTTAATGCATCCTTGGATCTTGAGCCGAGGAGAGACAAGTTGA 810 0.4247 MCTTTQYELCEEIGRGRFGTIYRCFDITTNEIYACKIINKTVLTDSTDRECLQNEPKYMTLLSPHPNILQIYDVSQDDDVLTIVMELCQPLTLFDKIFQNTLSEPQSASVMVQLISAINHCHRLGVAHRDLKPDNILFDSMGILKLGDFGSAEWFSEEKMMSGIVGTPYYVAPEILMGREYDEKVDVWSCGVILYMMLVGIPPFYGDDAVQIFEAVVRGNLRFPSRLFRSVSSSAKDLLRNMICKDASRRFSAQQVLMHPWILSRGETS* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0470 269 SUPERFAMILY Protein kinase-like (PK-like) 4 264 IPR011009 -
Lan4g0470 269 SMART serkin_6 7 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0470 269 PIRSF ILK 3 259 - -
Lan4g0470 269 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Lan4g0470 269 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1 5 268 - -
Lan4g0470 269 ProSiteProfiles Protein kinase domain profile. 7 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0470 269 Gene3D Transferase(Phosphotransferase) domain 1 92 269 - -
Lan4g0470 269 PANTHER SERINE/THREONINE-PROTEIN KINASE 5 268 - -
Lan4g0470 269 Pfam Protein kinase domain 7 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0470 269 ProSitePatterns Protein kinases ATP-binding region signature. 13 36 IPR017441 GO:0005524
Lan4g0470 269 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Lan4g0470 269 CDD STKc_CAMK 6 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0470 Lan-Chr4 7079404 7081615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0470 7 269 EF-hand Containing Proteins AT1G50700 42.322 8.70e-75 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lan4g0470 Pkinase 2.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0470 - K08794 gmx:548089 412.535