Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0456 ATGCAATTTCATCATAATGCTATTCCTATCTCCCAACATGATGCACTGTGGCAAATGACATCCAGTGAAACAATGGAAGCTGGAACTTATCCAGAGCGCCCTGGAGAGCCAGATTGTTCATATTACATCAGAACAGGCCTCTGTAGATTTGGTGCAACATGTCGATTTAATCATCCTCCTAACAGGAAGCTTGTTATTGCAATGGCAATGATGAAAGGCGAGTTCCCAGAAAGAATAGGGCAACCTGAATGTCAGTACTATTTGAAGACAGGAACTTGCAAATTTGGAGCTACATGCAAGTTTCATCATCCTAGAGACCAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATATTTTAGGCTATCCGCTCCGCCCTAATGAGCCTGAATGCACTTATTATTTAAGAAGCGGACAGTGTAAATTTGGGAATACTTGCAAATTCCACCATCCTCAACCAAGTAATATGATGCTTTCATTACGGGGTTCTCCTGTTTACCCTACTGTCCAATCTCCAACTACACCAGGTCATCAGTCATATGCCGGAGGAATTGCAAATTGGCCAAGAGCATCTTACATTGCTAGTCCACGCTGGCAAGGCCCTTCAAGTTACACACCTTTAATTCTACCTCAAGGAATGGTTTCAGTGCCTGGGTGGAGTGCATACAGTGGACAAACGGGATCAATCTCTATTTCAGATAGTCCACAGCAAACAGTAGGAACTGGTCAAACATATGGAACTTCTCGCCAAGATGAAATAGAAAATGCAAGATCACAAGGGGCATATTCTCAATTCCGTTCTGGCTCTGTTCCTGTAGGGTTTTATGCATTGCAGAGGGAGAACATATTTCCTGTGAGACCTGGTCAGCCTGAATGCCCATTCTACATGAAGACCGGAGATTGTAAGTTTGGTGCAGTCTGTCGGTTCCATCATCCGCTTGAGAGGCTTATTCCTGTTCCCGACTGTGTCTTGAGTCCAATAGGCCTTCCTTTACGTCCTGGAGAACCATTGTGTGTCTTTTACTCACGTTACAGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGGAATCTTCACATATAATGTAACCGCATCGCCTTCAGCTGAGGCCCCAGGACGGCGTTTGTTAGGTTCTTCATCAGGAACACCTGCATTAAATTTATCATCAGAAGGGCTTGTTGAGTCAGGCTCCAGGAGGCTTTCAATATCAGAGACAAGACAAATTCCTTCTAGTGATGATGACATTGATGATGAGGGGTGA 1269 0.4444 MQFHHNAIPISQHDALWQMTSSETMEAGTYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLVIAMAMMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDQAGIAGRVALNILGYPLRPNEPECTYYLRSGQCKFGNTCKFHHPQPSNMMLSLRGSPVYPTVQSPTTPGHQSYAGGIANWPRASYIASPRWQGPSSYTPLILPQGMVSVPGWSAYSGQTGSISISDSPQQTVGTGQTYGTSRQDEIENARSQGAYSQFRSGSVPVGFYALQRENIFPVRPGQPECPFYMKTGDCKFGAVCRFHHPLERLIPVPDCVLSPIGLPLRPGEPLCVFYSRYSICKFGPSCKFDHPMGIFTYNVTASPSAEAPGRRLLGSSSGTPALNLSSEGLVESGSRRLSISETRQIPSSDDDIDDEG* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0456 422 Gene3D - 77 161 - -
Lan4g0456 422 Gene3D - 285 368 - -
Lan4g0456 422 ProSiteProfiles Zinc finger C3H1-type profile. 124 152 IPR000571 GO:0046872
Lan4g0456 422 PANTHER PROTEIN PHOSPHATASE RELATED 9 421 - -
Lan4g0456 422 SUPERFAMILY CCCH zinc finger 127 152 IPR036855 GO:0046872
Lan4g0456 422 MobiDBLite consensus disorder prediction 375 422 - -
Lan4g0456 422 ProSiteProfiles Zinc finger C3H1-type profile. 331 359 IPR000571 GO:0046872
Lan4g0456 422 MobiDBLite consensus disorder prediction 382 411 - -
Lan4g0456 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 127 151 IPR000571 GO:0046872
Lan4g0456 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 287 311 IPR000571 GO:0046872
Lan4g0456 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 35 60 IPR000571 GO:0046872
Lan4g0456 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 333 358 IPR000571 GO:0046872
Lan4g0456 422 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 81 105 IPR000571 GO:0046872
Lan4g0456 422 Gene3D - 1 68 - -
Lan4g0456 422 SUPERFAMILY CCCH zinc finger 38 61 IPR036855 GO:0046872
Lan4g0456 422 ProSiteProfiles Zinc finger C3H1-type profile. 285 313 IPR000571 GO:0046872
Lan4g0456 422 SUPERFAMILY CCCH zinc finger 82 107 IPR036855 GO:0046872
Lan4g0456 422 SMART c3hfinal6 331 358 IPR000571 GO:0046872
Lan4g0456 422 SMART c3hfinal6 124 151 IPR000571 GO:0046872
Lan4g0456 422 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Lan4g0456 422 SMART c3hfinal6 78 105 IPR000571 GO:0046872
Lan4g0456 422 SMART c3hfinal6 285 312 IPR000571 GO:0046872
Lan4g0456 422 ProSiteProfiles Zinc finger C3H1-type profile. 78 106 IPR000571 GO:0046872
Lan4g0456 422 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 9 421 - -
Lan4g0456 422 SUPERFAMILY CCCH zinc finger 289 315 IPR036855 GO:0046872
Lan4g0456 422 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Lan4g0456 422 SUPERFAMILY CCCH zinc finger 334 358 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0456 Lan-Chr4 6901827 6908159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0456 16 420 C2H2 Transcription Factor Family AT3G02830 59.952 7.04e-171 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan4g0456 zf-CCCH 1.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0456 - - lang:109354276 773.081