Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0451 ATGGGTTCTATGAACTGGTTGGGTTTCTCTCTTGCCCCTAATGAAGAAGATAACCATTCTCACTCTCAAACGGTGCCACCAAGCCTTGACTTCAACCCTGATGGCACTGATATATCTCCTTCTTTTGCTATCTTTGAAGATCTCAACACAAATAACACTCATGCTCCCACTACTCCTCAAGATTGGAACACAAAGGGTTTGGGAAACAACTCATCGGAGTATAACTACTACAACAACAGCAGCCAAAACATGCTATTGGGAACTTCATGCAACCAACAACAACATCCAAAACTTGAAAACTTTCTTGGGCAACATTCTTTTGGCGATAATAATCTTAACCATACAACATACGGTGGTAGTATTAACAACACAACCTCCTCCTCCTCCGGTGACTTAATGTTCCAAAACTGTTCTCTAAAACCTCCATTAGGTAGTGGTGATGGCGGTGACGGTGGTGGTAGTCCTAGGAACTATACTTCTATAGGGCTTTCAATGATAAAGACATGGTTGAGAAACCAACCACCACAGTCAGATTCAGCAAATATGAAGAGTAGTACTGTTTCACAGTCAAGTTCTTCTGTAGCACTTCCTCTTCTTACATCAAATGTGGATAATGGAGATAGTTCTTCCTCTGACAATAACAAGCATAACCCTAAGACTTCTTCTGCAGTGGTCAATGACCAAAGTGGTGATGCTGTTGAAAATGCGGTGCCCAGAAAATCTGTTGACACATTTGGACAAAGAACTTCTATATACCGGGGTGTGACTAGGCATAGGTGGACAGGTAGATATGAGGCTCACTTGTGGGACAATAGTTGTAGAAGAGAAGGCCAAACTCGCAAAGGAAGACAAGTTTACTTGGGAGGTTATGACAAAGAAGAAAAAGCAGCTAGGGCATACGATTTAGCTGCCCTTAAGTATTGGGGAACAACTACTACAACAAATTTTCCTATTAGCAATTATGAAAAAGAGTTGGAAGAAATGAAGCACATGACAAGACAAGAATACGTCGCTTCATTGAGAAGGAAAAGTAGTGGGTTTTCTCGCGGTGCATCCATTTATCGAGGAGTAACTAGGCATCACCAACATGGTAGATGGCAAGCAAGGATTGGAAGAGTTGCTGGCAACAAAGATCTCTATTTGGGAACTTTCGGTACCCAAGAAGAGGCAGCAGAAGCATATGACGTAGCAGCAATCAAATTCCGAGGACTGAATGCAGTTACAAACTTTGACATGACAAGATACGATGTTAAGAGCATTCTTGAGAGCACCACTTTACCCATTGGTGCTGCTGCAAAACGTAATTTGAAGGATAATAACATTGATCTCACTGTTACTACTCTTGATCATAATATTAATGCACCTCATATAAGGTCATTATCATCATCAGAGGAAAATAACATGAGTTCTCAGCTTAGCTATGGTGCAACAACCTTATACCATGGTTGGCCTTCTCTTGCATTTCAACAACCTCAACAACTTTATAGTCAGGTACCTAATAATTACACTACTTATGGACATAACTCACAGAAGTTTTGGTGCAAGCAAGAACAAGATCCTGATGATCATGCTTCTCATCAAAATTTTCAAGATATGCATTACCAACTTCAGTTAGGGAGTAATAATAATAATAATAATAATACTCATAATTTCTTTCAATCTGATTCTGGATTGAATAGTATCATGAGCATTGGTGGTTCTGCTTCTATGGATAATAATAGCCCTAGCTCTAGCTCTATCATTTATGGTGGTGGTGATGGTAATAATGGTTATGGAAATGGTAGGGGCTACATGATTCCGATGGCTACTACTACTTTCAATATTGCTGATGATGGTAACCAAAACCATATTAGCAATGGTTATGGTAATGATGATAATAATGAAGTGAAGGTGGTTGGTTATGAAAATGGTTATGGTTCAAGTACTAATGATCCTTATAATAATGCAAGGAACTTGTATTATCAACAAACATCTGCAGAAGCATGCAATAATTGGGTTCCTACTGCTATTCCAACTCTTGCATCAAGGTCTAACAATGTTGCTCTTTGCCATGGAACTCAACCCTTCACATTATTGCATGAATAG 2085 0.3942 MGSMNWLGFSLAPNEEDNHSHSQTVPPSLDFNPDGTDISPSFAIFEDLNTNNTHAPTTPQDWNTKGLGNNSSEYNYYNNSSQNMLLGTSCNQQQHPKLENFLGQHSFGDNNLNHTTYGGSINNTTSSSSGDLMFQNCSLKPPLGSGDGGDGGGSPRNYTSIGLSMIKTWLRNQPPQSDSANMKSSTVSQSSSSVALPLLTSNVDNGDSSSSDNNKHNPKTSSAVVNDQSGDAVENAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISNYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDVAAIKFRGLNAVTNFDMTRYDVKSILESTTLPIGAAAKRNLKDNNIDLTVTTLDHNINAPHIRSLSSSEENNMSSQLSYGATTLYHGWPSLAFQQPQQLYSQVPNNYTTYGHNSQKFWCKQEQDPDDHASHQNFQDMHYQLQLGSNNNNNNNTHNFFQSDSGLNSIMSIGGSASMDNNSPSSSSIIYGGGDGNNGYGNGRGYMIPMATTTFNIADDGNQNHISNGYGNDDNNEVKVVGYENGYGSSTNDPYNNARNLYYQQTSAEACNNWVPTAIPTLASRSNNVALCHGTQPFTLLHE* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0451 694 Gene3D AP2/ERF domain 251 319 IPR036955 GO:0003700|GO:0006355
Lan4g0451 694 Gene3D AP2/ERF domain 353 413 IPR036955 GO:0003700|GO:0006355
Lan4g0451 694 MobiDBLite consensus disorder prediction 118 135 - -
Lan4g0451 694 ProSiteProfiles AP2/ERF domain profile. 251 317 IPR001471 GO:0003700|GO:0006355
Lan4g0451 694 MobiDBLite consensus disorder prediction 172 230 - -
Lan4g0451 694 PANTHER BNAC02G44180D PROTEIN 5 618 - -
Lan4g0451 694 MobiDBLite consensus disorder prediction 118 158 - -
Lan4g0451 694 PRINTS Ethylene responsive element binding protein signature 252 263 IPR001471 GO:0003700|GO:0006355
Lan4g0451 694 PRINTS Ethylene responsive element binding protein signature 393 413 IPR001471 GO:0003700|GO:0006355
Lan4g0451 694 SUPERFAMILY DNA-binding domain 250 319 IPR016177 GO:0003677
Lan4g0451 694 CDD AP2 250 319 IPR001471 GO:0003700|GO:0006355
Lan4g0451 694 Pfam AP2 domain 353 403 IPR001471 GO:0003700|GO:0006355
Lan4g0451 694 Pfam AP2 domain 251 309 IPR001471 GO:0003700|GO:0006355
Lan4g0451 694 MobiDBLite consensus disorder prediction 15 29 - -
Lan4g0451 694 SUPERFAMILY DNA-binding domain 352 412 IPR016177 GO:0003677
Lan4g0451 694 MobiDBLite consensus disorder prediction 172 229 - -
Lan4g0451 694 CDD AP2 352 411 IPR001471 GO:0003700|GO:0006355
Lan4g0451 694 SMART rav1_2 353 417 IPR001471 GO:0003700|GO:0006355
Lan4g0451 694 SMART rav1_2 251 323 IPR001471 GO:0003700|GO:0006355
Lan4g0451 694 MobiDBLite consensus disorder prediction 1 29 - -
Lan4g0451 694 ProSiteProfiles AP2/ERF domain profile. 353 411 IPR001471 GO:0003700|GO:0006355
Lan4g0451 694 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0451 Lan-Chr4 6769119 6774030 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0451 96 438 AP2-EREBP Transcription Factor Family AT1G51190 60.350 3.66e-136 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lan4g0451 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0451 K09285 - qsu:111984882 688.723