Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0446 ATGGGGACCGAGTTCATGCGAATATGTGTTAAAGAAGATAATGATGACTTTCCATCTGTTCCACCAGGTTTTGAGTCATATACAGCTTTCTCACTAAAGAGGGTAGAAGACAATGAGAAACAAAATGATAAAAATATGACCAGTTGTTCAGCCTCTACTAATGCTTATGATTCACTGTCCACTAAGGTGGAAACTGATGTTCATGTTAGTGATACCGCAAAGGTTCCTAGGACTCTCCGACGAAGACCATGGATTAACTATGGACGATGTGAGAATAGTTCAGAGGAAGACTCTGATTCTGAGTGTCGTGATCAAAACTACTCCTCAAGACCTTGTCTACCTAGGGGAGTTATCCGTGGATGTCCTGATTGCAGTAATTGTCAAAAGGTTGTTGCCAGATGGCGACCAGAAGATGCTCGTAGGCCAAATCTCGAAGAAGCTCCTGTTTTCTATCCCACTGAAGAGGAGTTTCAAGATACTTTGAAATATATTTCAAGCATTCGCTCCAGAGCTGAACCATACGGAATTTGTCGCATTGTTCCCCCGTCTTCCTGGAAACCCCCTTGTCCTCTTGAGGAAAAAAGTATATGGGATGGTTCTAAATTTGCTACCCGTGTTCAGAGGATTGACAAACTTCAGAATCGTGGTTCAATTAGAAATATGTCAAGGATTCAAAGTAATATGAAAAGGAAAAGGAGAAGATGCACACAAATAGAAATGGTTAATGGCACCAGAAACGTTGGATTTTCTGAGGCTGAAAGTTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAACATTTCAGAGATATTCAGATGATTTTAAGACCAAATACTTCAGAAAATATGGGGATGTATATCAGTCGGAAGCAAATACAACAGTTTCAAATGGTAACTCAGAGCCATCTGTGGAGAACATTGAGGGGGAATATTGGCGAATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACTGGGTCTTTTGGGAGTGGTTTTCCTAGAAAGCCTAGCCATGTCTATTCTGCTTCAGACGAACATTACATCAAATCGGGCTGGAATTTGAATAACTTTGCTAGGCTACCTGGATCTCTACTATCTTATGAGAGCAGTGATATATCTGGTGTTCTAGTGCCATGGTTGTATATAGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTGGAAGATCATCACTTATATTCATTGAATTATATGCACTGGGGTGCTTCAAAAATGTGGTATGGTGTCCCTGGAAAAGATGCTTGTAAGTTGGAAGAGGCCATGAGAAAGCATTTACCAGAGCTTTTTGAACAACAGCCTGACTTGCTTCATAAACTGGTCACTCAGCTTTCTCCTTCCATCCTTAAGTCTAAAGGAGTACCAGTTTATAGATGTGTCCAAAACCCTGGGGAGTTTGTTCTTACATTTCCTCGAGCCTACCACTCTGGCTTCAATTGTGGCTTCAACTGTGCAGAGGCTGTTAACGTAGCTCCTATTGACTGGCTGCCTCATGGGAATATTGCTATCGAGCTGTACCGGGAGCAGGGGCGCAGAACTTCTATATCCCATGACAAGCTGTTGCTTGGGGCTGCAAGGGATGCAGTACGAGCACAGTGGGAGCTTAATTTGCTGAAGAAGAATACTTCAGATAATATACGTTGGAAAGATGTCAGTGGAAAGGATGGCCTCCTGGCAAAAGAATTCAAGGCACGTGTTGAGATGGAACGGGTAAGAAGGGAGTTTCTTTGCAGATCTGCGAAGGCATTGAAAATGGAGAGTAGTTTTGATGCTACGAATGAAAGGGAATGCATTATTTGCCTTTTTGATTTACACCTCTCTGCAGCCGGTTGTCGCTGTTCCCCAGATAGATATGCTTGCTTGGATCATGCGAAGCAGTTTTGTTCTTGCAGTTGGGATTCCAAATTCTTCCTCTTTCATTATGATATTAGTGAACTAAATATTCTTGTTGAGGCATTGGAAGGAAAATTAAGTGCAGTATACAGATGGGCAAAATTAGATCTTGGTCTGGCATTAACTTCTCATGTCTCACCAGGCAAGGCAACAATACACACAGAATTGAGATCGGATTCATCAAATTTGTCCTGTTCTTCTTGGGCCAATGTGCATAAAGATTTGGCTTTGCATCCATCAAATAAATTAATTGATGATTATAGTATGAGTTCAAATCCTGGAAACAATCTCTTCACTCGCGAGGATAAGGTTGCTTACATCTACCCTCCCCAGACCACACTAGGTGGAAGCCTCATGCATTGGGCCGCGACAGATGTCCCAAGAAAGAATCAAGCACATGCAGCAAAACCTACATGTGAAATGGCTAATCATAAAAACTATGTTAACATAGAAGGATCTCTTATTTGCGAATCAAAGCTGAGAACCCCTGGTGGTCAATTGTCTAAAAAGGAACCGTCAAGTGAGAAAGGTTCACTTTACCGACATGACAATGTGATACTTCTTAGTGATGATGAAGGTGATGAAATTAAAATGCCGGATTCAAATAGAAGAAAGGAAATTTCTTGTGTTGTTACAGGTTCTAGAAATACAGCAAGCCCATGTAACAATATAGAAAACACCAACCTGACCATCTCTGTGACAGATGCTGCTGTGATAGATGAAAAGAATGGTCCTACGTTGCCTCATGGAGATTTGAGTTCTTGTTCTTCTCAGCTTTTGCATTTGAAACAGGAACGTTATGAAAACAGTGGACCGGTTCTTGCTTTTGCCCCAGTAGATCTTAATTACCATATAGGTCATACAACCACAGAATCAGTTAGGAATATTCCAGCTTCTTCAACAGGAGAGGCGAGCCATCATTGTTTGGAAAGTTCAGAGAGTTCTTCTCTGAACCCACAACAGTCTGGCACTATCAAGGCCAAGAATGAGGAGAATCGTGAAACGTTTGGAGGATGTCCCACTTCTAATGTAGCTGACAATGTAAGATCTGTTAATGTAAACCTTTCTTGCAGTCTAAACAATTTGGAAAGGAATTCCCGTCAGAAAGGTCCTCGTATTGCCAAGGTTGTCCGGCGTATCAACTGCAATGTTGAACCTATAGAATTTGGAATTGTGCTTCCTGGAAAGTCATGGTGCAGCAGTCAGGCTATATTCCCAAGGGGATTTAAAAGCCGTGTCAGATACATAAGTGTTTTAGATCCATCCTCTGCTATGTGTTATTATATTTCAGAAATTCTTGATGCTGGACGTGATGGACCCCTATTTATGGTTTCCACCGAAAATTGCCCAAGTGAGGTCTTCATTCATGTTTCACCTGCAAGATGCTGGGAACTTGTAAGAGAGAGAGTGAATCAAGAGATCGCAAAACAACACAAGCTGGGAAGAAAGGGTCTTCCTCCTTTACAGCCTCCTGGCAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCCTCTCCAGAAATTGTGCAGGTTATTGAGGCACTAGATCGAAAACGAGTTTGTAATGAATATTGGGACTCCCGACCCTACTCTCGGCCTCAAGGGCAGATTTCCCAAGCTCACCAAACCAATATAAATGGTAGAAATGGTGAAGGGGTCCTCATGAATCAGCACTTGCCTGTTGAAGTTGTTGCAACACTAAGAAGCCTATTTAAAAAGGGCAACGCTGAAGAATTGAACTCATTGTACTACATTCTCAGTGACAATAAGCCGGCGGTTGGCCGGATGCAAATTGCGCAACTTCTCAATGAAGAGATTCAAAAATCACAACCCTCTTCCTAG 3768 0.4204 MGTEFMRICVKEDNDDFPSVPPGFESYTAFSLKRVEDNEKQNDKNMTSCSASTNAYDSLSTKVETDVHVSDTAKVPRTLRRRPWINYGRCENSSEEDSDSECRDQNYSSRPCLPRGVIRGCPDCSNCQKVVARWRPEDARRPNLEEAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPSSWKPPCPLEEKSIWDGSKFATRVQRIDKLQNRGSIRNMSRIQSNMKRKRRRCTQIEMVNGTRNVGFSEAESFGFEPGPEFTLETFQRYSDDFKTKYFRKYGDVYQSEANTTVSNGNSEPSVENIEGEYWRMVESPTEEIEVLYGADLETGSFGSGFPRKPSHVYSASDEHYIKSGWNLNNFARLPGSLLSYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGASKMWYGVPGKDACKLEEAMRKHLPELFEQQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPIDWLPHGNIAIELYREQGRRTSISHDKLLLGAARDAVRAQWELNLLKKNTSDNIRWKDVSGKDGLLAKEFKARVEMERVRREFLCRSAKALKMESSFDATNERECIICLFDLHLSAAGCRCSPDRYACLDHAKQFCSCSWDSKFFLFHYDISELNILVEALEGKLSAVYRWAKLDLGLALTSHVSPGKATIHTELRSDSSNLSCSSWANVHKDLALHPSNKLIDDYSMSSNPGNNLFTREDKVAYIYPPQTTLGGSLMHWAATDVPRKNQAHAAKPTCEMANHKNYVNIEGSLICESKLRTPGGQLSKKEPSSEKGSLYRHDNVILLSDDEGDEIKMPDSNRRKEISCVVTGSRNTASPCNNIENTNLTISVTDAAVIDEKNGPTLPHGDLSSCSSQLLHLKQERYENSGPVLAFAPVDLNYHIGHTTTESVRNIPASSTGEASHHCLESSESSSLNPQQSGTIKAKNEENRETFGGCPTSNVADNVRSVNVNLSCSLNNLERNSRQKGPRIAKVVRRINCNVEPIEFGIVLPGKSWCSSQAIFPRGFKSRVRYISVLDPSSAMCYYISEILDAGRDGPLFMVSTENCPSEVFIHVSPARCWELVRERVNQEIAKQHKLGRKGLPPLQPPGSLDGFEMFGFSSPEIVQVIEALDRKRVCNEYWDSRPYSRPQGQISQAHQTNINGRNGEGVLMNQHLPVEVVATLRSLFKKGNAEELNSLYYILSDNKPAVGRMQIAQLLNEEIQKSQPSS* 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0446 1255 Pfam jmjN domain 148 181 IPR003349 -
Lan4g0446 1255 SUPERFAMILY Clavaminate synthase-like 354 546 - -
Lan4g0446 1255 SMART fyrc_3 1084 1178 IPR003889 GO:0005634
Lan4g0446 1255 ProSiteProfiles JmjN domain profile. 147 188 IPR003349 -
Lan4g0446 1255 SMART JmjN_1 146 187 IPR003349 -
Lan4g0446 1255 SMART cupin_9 356 519 IPR003347 -
Lan4g0446 1255 Gene3D Cupin 132 503 - -
Lan4g0446 1255 MobiDBLite consensus disorder prediction 940 984 - -
Lan4g0446 1255 ProSiteProfiles FYR domain FYRC motif profile. 1080 1170 IPR003889 GO:0005634
Lan4g0446 1255 Pfam C5HC2 zinc finger 609 659 IPR004198 -
Lan4g0446 1255 Pfam JmjC domain, hydroxylase 386 502 IPR003347 -
Lan4g0446 1255 Gene3D - 1026 1164 - -
Lan4g0446 1255 MobiDBLite consensus disorder prediction 940 969 - -
Lan4g0446 1255 Pfam F/Y rich C-terminus 1082 1166 IPR003889 GO:0005634
Lan4g0446 1255 ProSiteProfiles FYR domain FYRN motif profile. 1019 1078 IPR003888 GO:0005634
Lan4g0446 1255 PANTHER LYSINE-SPECIFIC DEMETHYLASE 994 1251 - -
Lan4g0446 1255 PANTHER LYSINE-SPECIFIC DEMETHYLASE 75 694 - -
Lan4g0446 1255 PANTHER JUMONJI 14-RELATED 75 694 - -
Lan4g0446 1255 PANTHER JUMONJI 14-RELATED 994 1251 - -
Lan4g0446 1255 Pfam F/Y-rich N-terminus 1031 1075 IPR003888 GO:0005634
Lan4g0446 1255 ProSiteProfiles JmjC domain profile. 356 519 IPR003347 -
Lan4g0446 1255 SMART fyrn_3 1033 1078 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0446 Lan-Chr4 6686054 6696746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0446 1 1249 JUMONJI Transcription Factor Family AT1G08620 53.411 0.0 1235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lan4g0446 JmjC 4e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0446 - - lang:109345364 2522.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0446 4 6686054 6696746 Lan19g0732 19 13714546 13716688 LSH
Lan4g0446 4 6686054 6696746 Lan16g0333 16 2700130 2702645 LSH