Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0439 ATGGTGGGTTCATGTTTCCATGGGCTTTATCTGAGAAGGTCAAAGAATAATAAACCTTTACCAGCACCTTCTACTTCTTACAAGACCAAGTTGAAATGTGAAATGGAGAACAATAACATGGCAAGGAAGAGATTTGATAGCTTGGAATCATGGTCTATGATATTAGACTCTGAGAATGTAGAGACATGGGAGGCTTCAAAAGAGGACACAGAAGAATGGAGTGCAGATCTTTCACAACTTTTCATAGGTAACAAATTTGCTTCTGGAGCTCATAGTAGGATTTACCGTGGAATTTACAAGCAAAGAGCAGTTGCTGTGAAAATGGTGAAGATTCCAACACAGGATGAAGAGAGAGGGGTGTTATTAGAGCAACAATTTAAGTCTGAAGTATCTTTGCTTTCACGTTTATTGCATGATAACATAGTGCAGTTTATTGCAGCATGTAAAAAACCACCAGTGTACTGTATCATAACCGAATACATGTCACAAGGAACACTAAGGATGTATCTGAACAAAAAAGAACCATACTCTCTTGCAATAGACACAATTTTGAGGTTAGCTCTTGACATATCTAGGGGTATGGAGTACCTTCATTCACAAGGTATCATTCACAGAGACCTAAAGTCTAATAACTTGCTTCTCAATGATGAGATGAGGGTTAAGGTTGCAGATTTTGGTACATCATGTCTCGAAACTCGATGCCGTGAGACCAAAGGTAACATGGGAACATATCGTTGGATGGCGCCGGAGATGATCAAGGAAAAACCTTATGCAAGGAAAGTTGATGTGTATAGTTTTGGTATTGTTCTTTGGGAGCTCACAACTTGTTTACTTCCTTTCCAAGGAATGACACCAGTCCAAGCTGCTTTTGCTGTGGCTGAGAAGCAGAACGAAAGGCCTCCACTATCAGCAAGTTGTGAAGCTGCACTTGCACATTTGATAAAGCGTTGCTGGTCATCAAACCCATCAAAGAGGCCAGATTTTAGTGAAATTGTGTCTACTCTTGAGAAATATGATGAGTGTGTGAAAGAGGGTCTACCTTTAACTCATCATTCTGGCTTGGTAAATGGCAATGCCATTATTCAACACCTAAAAGGCTGTGTCTCCATACCTATACATGCATGA 1125 0.4009 MVGSCFHGLYLRRSKNNKPLPAPSTSYKTKLKCEMENNNMARKRFDSLESWSMILDSENVETWEASKEDTEEWSADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVKIPTQDEERGVLLEQQFKSEVSLLSRLLHDNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLAIDTILRLALDISRGMEYLHSQGIIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKPYARKVDVYSFGIVLWELTTCLLPFQGMTPVQAAFAVAEKQNERPPLSASCEAALAHLIKRCWSSNPSKRPDFSEIVSTLEKYDECVKEGLPLTHHSGLVNGNAIIQHLKGCVSIPIHA* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0439 374 ProSiteProfiles Protein kinase domain profile. 80 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0439 374 SUPERFAMILY Protein kinase-like (PK-like) 58 335 IPR011009 -
Lan4g0439 374 Gene3D Transferase(Phosphotransferase) domain 1 163 351 - -
Lan4g0439 374 Gene3D Phosphorylase Kinase; domain 1 69 162 - -
Lan4g0439 374 PRINTS Tyrosine kinase catalytic domain signature 158 171 IPR001245 GO:0004672|GO:0006468
Lan4g0439 374 PRINTS Tyrosine kinase catalytic domain signature 196 214 IPR001245 GO:0004672|GO:0006468
Lan4g0439 374 PRINTS Tyrosine kinase catalytic domain signature 242 252 IPR001245 GO:0004672|GO:0006468
Lan4g0439 374 PRINTS Tyrosine kinase catalytic domain signature 261 283 IPR001245 GO:0004672|GO:0006468
Lan4g0439 374 PRINTS Tyrosine kinase catalytic domain signature 306 328 IPR001245 GO:0004672|GO:0006468
Lan4g0439 374 Pfam Protein tyrosine and serine/threonine kinase 82 335 IPR001245 GO:0004672|GO:0006468
Lan4g0439 374 CDD STKc_MAP3K-like 87 335 - -
Lan4g0439 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 202 214 IPR008271 GO:0004672|GO:0006468
Lan4g0439 374 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 14 364 - -
Lan4g0439 374 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 14 364 - -
Lan4g0439 374 SMART serkin_6 80 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0439 Lan-Chr4 6557046 6559805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0439 1 369 MAP Kinase Kinase Kinase AT1G62400 79.365 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lan4g0439 PK_Tyr_Ser-Thr 2.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0439 - - gmx:100799437 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0439 4 6557046 6559805 Lan16g0365 16 3531320 3536372 LSH
Lan12g1335 12 18935851 18938729 Lan4g0439 4 6557046 6559805 PCT