Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0434 ATGAGTCAACTCGGAACGAGGCAGAGGGCGGAACCAACCACGATTCTTAGTTTGTTAACAGATCAAATGGACGGCGTTGATGGAGGGACTCGTAGGAGACGTAGTTTGAAGGAACGGTTAGGATTCATCGGCATGGGTTGTTGTGGTGCCACGTGGGTTTTCCGTTCAACAAACCTAACAGCAACTAACGGTGAAGAACAACAACAACAACAACAGCATGGGTTAGTGGGTCAAGATCCAGAATTGGGTCGACCCGAATGTGTGGATCCGGTTGCGTCTTCTTCTTCGGGGATGAATCTTGCGGCGGCGTTGGCGGCGGAGAGGCAGCTACGGGGGCCGCATGAAGGAGAGAGGGAGCCGGGGACGCCGTGGAGGGTGTCGCTGATGAGGTTGTTAGAGGAGACGCAGGAGAAAGAAAGAAGAGTAACTTCGGTGGGGAATGATTCAGTGTGCTGCGTGTGCATGGGAAGGAATAAAGGTGCAGCTTTCATTCCATGTGGGCACACTTTTTGTAGAGTGTGCTCCAGGGAATTGTGGCTCAATCGAGGGTCTTGCCCACTTTGTAATCGTTCCATACTCCAGATTCTAGATATTTTCTGA 600 0.515 MSQLGTRQRAEPTTILSLLTDQMDGVDGGTRRRRSLKERLGFIGMGCCGATWVFRSTNLTATNGEEQQQQQQHGLVGQDPELGRPECVDPVASSSSGMNLAAALAAERQLRGPHEGEREPGTPWRVSLMRLLEETQEKERRVTSVGNDSVCCVCMGRNKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILQILDIF* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0434 199 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Lan4g0434 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 199 IPR013083 -
Lan4g0434 199 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Lan4g0434 199 CDD RING-HC 151 188 - -
Lan4g0434 199 SMART ring_2 151 188 IPR001841 -
Lan4g0434 199 MobiDBLite consensus disorder prediction 63 94 - -
Lan4g0434 199 SUPERFAMILY RING/U-box 145 195 - -
Lan4g0434 199 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 199 - -
Lan4g0434 199 PANTHER OS01G0917900 PROTEIN 13 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0434 Lan-Chr4 6509986 6510806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0434 3 199 C3H Transcription Factor Family AT4G22250 53.846 3.13e-61 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0434 - - gmx:100804292 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0434 4 6509986 6510806 Lan16g0372 16 3587211 3588408 LSH