Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0430 ATGGCTAGCAATAAGGGAGAGCTTACATACATAGAAGATGACTCAAAGAGAAAGATCACATGCAAGAAAAGGAAAGCTAGTCTGATCAAAAAGGTCAATGAGCTAAGCACACTCTGTGGAATTGAAGCATGCGCTATTATATTTGATCCTAGTGCATCTCAACCAGAGATTTGGCCATCACACTCGGAGGTTGAAAGGCTCATCAACAAGTTCATGGAAATGCCTGAGATGGAACAAAGAAAGTATATGTATAATCAAGAGAGTTTTTTATCCAAAAATTTCAATAAGGCCCAAGATCAATTGAAGAGACTGAGGGATGAAAACAAGAGAATGGAAATGGAGATTTTCATGTTCCAGTGTCTCAATATTGGGTGTATTGTTAACACTGCTAACATGGTTGATACGAATTATCTCTTGTTTGTGATAAATCAAACCCTCAAAGATATTCAATGGAAACAAAGTAGGGACCAACGTCAACATGGAACAGTAGTGGCTGCAAGTAAAGAAGAACCATTGAATGAAGAGGTAGGAAGTGTGGATGGTCCTGTGCATGGGGTGGAGCAAACAAACATGGGTGCCATGCAGATTCAGGATTGGTCTTCTGATTCAACCAATGATGGAGGAAATATGATGCTTCCATCTGGAGATAATAATAATTTGTCAAATGGCTTTTGGCCTAGTACTCCTTCTTTCCCTTAA 699 0.392 MASNKGELTYIEDDSKRKITCKKRKASLIKKVNELSTLCGIEACAIIFDPSASQPEIWPSHSEVERLINKFMEMPEMEQRKYMYNQESFLSKNFNKAQDQLKRLRDENKRMEMEIFMFQCLNIGCIVNTANMVDTNYLLFVINQTLKDIQWKQSRDQRQHGTVVAASKEEPLNEEVGSVDGPVHGVEQTNMGAMQIQDWSSDSTNDGGNMMLPSGDNNNLSNGFWPSTPSFP* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0430 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lan4g0430 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan4g0430 232 MobiDBLite consensus disorder prediction 198 232 - -
Lan4g0430 232 SUPERFAMILY SRF-like 4 94 IPR036879 GO:0003677|GO:0046983
Lan4g0430 232 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Lan4g0430 232 CDD MADS_SRF_like 4 81 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lan4g0430 232 Coils Coil 87 114 - -
Lan4g0430 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 179 - -
Lan4g0430 232 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Lan4g0430 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan4g0430 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan4g0430 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan4g0430 232 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0430 Lan-Chr4 6475584 6476282 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0430 1 182 Type I MADS-box Gene Family AT5G48670 43.407 8.86e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan4g0430 SRF-TF 6.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0430 - - lang:109344582 476.478