Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0428 ATGACTAGAAATAAGGTCAAGCTTACATACATAGCTGATGACTCAAAGAGAAAAGCCACATACAAGAAAAGGAAAAATGGTCTTGTCAAGAAGACCAATGAGATCAGTATCCTATGTGGAATAGAAGCATGTGCTATTATATATGGTCCCAATGAGACTCAACCAGAGGTTTGGCCTTCTCACCCTGAGGTTCAAAGGGTGATTAACAAGTTCAAGACAATGCCAGAGCATGAACAAAACAAATATATGTTGAATCAAGAGAGCTTTTTGACAAAAAGCATCATGAAAACAAGGGATCAGCTGAAGAAACTGAGGAATGAAAACAAAAAGATAGAAATGGAGCTTTTCATGTTCCAATGCTTGAGTACTGGAAGCACTAATAACATGGTTGATTCTAATGATCTCTTGTGTGTGATAAATCAGACTCTGAAAGAGATTGAATGGAAGAAGTCTAGGGTTCAACCTCAACAAGGGACAGTAGAGGCTTCAAATGGAGCAAAACCTTTGAATGAAGAGAACACATTTGTGGATGCTCATAACCATATCCAAGGGATGATGCAGACCAATATGGGTCCGATGCAGATGCAGGATTGGTCTTTTGACTCAGCCAATGGTGGAGGAAATGTGATGCTTCCATTTCGAGATTATAATATCTCAAATGGATTTTGGCATGGTCCATCTTTCCATTGA 690 0.3899 MTRNKVKLTYIADDSKRKATYKKRKNGLVKKTNEISILCGIEACAIIYGPNETQPEVWPSHPEVQRVINKFKTMPEHEQNKYMLNQESFLTKSIMKTRDQLKKLRNENKKIEMELFMFQCLSTGSTNNMVDSNDLLCVINQTLKEIEWKKSRVQPQQGTVEASNGAKPLNEENTFVDAHNHIQGMMQTNMGPMQMQDWSFDSANGGGNVMLPFRDYNISNGFWHGPSFH* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0428 229 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 195 - -
Lan4g0428 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan4g0428 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan4g0428 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan4g0428 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 195 - -
Lan4g0428 229 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Lan4g0428 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan4g0428 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Lan4g0428 229 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Lan4g0428 229 Coils Coil 94 114 - -
Lan4g0428 229 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lan4g0428 229 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0428 Lan-Chr4 6454544 6455410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0428 1 146 Type I MADS-box Gene Family AT5G48670 53.333 5.93e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan4g0428 SRF-TF 2.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0428 - - lang:109344582 286.96