Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0425 ATGGAGGGTGGCAATTCAAATGGCACTTCTTGTTTGTTACCTTTTGGAGAGAACAGTAGTGGGCTATATCCAATGATGATGGTGCCTTTAGTGACTTCTCATCATGCTGGTCATCATCAAATAAATCCTCATAATCTTAATCATAATAGTAGTAACAATAATACTGATAGTACTATTAATGCTAACACTAACTGTCTCTTCCTTCCTATGCCTTCTTCTTCCACTAATGATCATCATCACAACCCAAACAGCAACAACAGTGGAAGAAACCCTTCTATCATGCTTGAGAATAACCACAACACCAGTGCCAACAACAACAGCAACACTGGAATAGGTTATTATTTCATGGAGAGTGATCACCACCACAACAACAACAATGGAAGCTCCTCCTCTTCCTCTTCTTCTGTCAAGGCCAAAATCATGGCTCATCCTCACTATCACCGTCTCTTGGCAGCTTACGTCAGTTGTCAAAAGGTTGGAGCACCGCCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCATCGGCAGTGGCAATGGCCGGAGACACAGGTGGATCAGCATGTCTAGGTGAAGATCCAGCACTGGATCAGTTCATGGAGGCTTATTGTGAGATGCTGACCAAGTATGAACAAGAACTCTCCAAACCCTTGAAGGAAGCCATGCTCTTCCTTCAAAGGTTCGAGTGCCAGTTCAAAAATCTCACTATTTCCTCCTCTGACCTTGCTTGTAATGAAGGTAGAGAAAGGAATGGATCATATGAAGAAGATGTTGATGTAGAAAACATAATAGATCCAGAAGCAGAAGAAAGGGAATTGAAGGGTCAGCTTTTACGTAAGTATAGTGGATACTTGGGAAGTTTGAAGCAAGAATTCATGAAGAAGAGGAAAAAAGGAAAGCTACCTAAAGAAGCAAGGTTACAATTACTTGATTGGTGGAGTAGACATTACAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCTCTAGCAGAATCAACAGGTTTGGATCAGAAGCAAATAAACAACTGGTTTATTAATCAAAGGAAACGACACTGGAAACCTTCAGATGAAATGCCGTTTTATTCCAATATGGTTGATCCAAGTCACTCACAATATTACATGGATAATGTTCTTACCCATCCTTTTCCTATGGATCTGTCCAACACAATGCTCTAG 1176 0.4133 MEGGNSNGTSCLLPFGENSSGLYPMMMVPLVTSHHAGHHQINPHNLNHNSSNNNTDSTINANTNCLFLPMPSSSTNDHHHNPNSNNSGRNPSIMLENNHNTSANNNSNTGIGYYFMESDHHHNNNNGSSSSSSSSVKAKIMAHPHYHRLLAAYVSCQKVGAPPEVVARLEEACASAVAMAGDTGGSACLGEDPALDQFMEAYCEMLTKYEQELSKPLKEAMLFLQRFECQFKNLTISSSDLACNEGRERNGSYEEDVDVENIIDPEAEERELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARLQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSDEMPFYSNMVDPSHSQYYMDNVLTHPFPMDLSNTML* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0425 391 Pfam KNOX2 domain 189 235 IPR005541 GO:0003677|GO:0005634
Lan4g0425 391 CDD homeodomain 303 355 IPR001356 GO:0003677
Lan4g0425 391 ProSiteProfiles 'Homeobox' domain profile. 291 354 IPR001356 GO:0003677
Lan4g0425 391 ProSitePatterns 'Homeobox' domain signature. 329 352 IPR017970 GO:0000981|GO:0006355
Lan4g0425 391 SMART KNOX1_2 134 178 IPR005540 GO:0003677|GO:0005634
Lan4g0425 391 Pfam KNOX1 domain 136 174 IPR005540 GO:0003677|GO:0005634
Lan4g0425 391 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 2 380 - -
Lan4g0425 391 MobiDBLite consensus disorder prediction 38 137 - -
Lan4g0425 391 SMART KNOX2_2 185 236 IPR005541 GO:0003677|GO:0005634
Lan4g0425 391 Gene3D - 296 358 - -
Lan4g0425 391 SUPERFAMILY Homeodomain-like 293 364 IPR009057 -
Lan4g0425 391 SMART HOX_1 293 358 IPR001356 GO:0003677
Lan4g0425 391 Pfam Homeobox KN domain 311 350 IPR008422 GO:0003677|GO:0006355
Lan4g0425 391 MobiDBLite consensus disorder prediction 36 137 - -
Lan4g0425 391 Pfam ELK domain 271 292 IPR005539 GO:0003677
Lan4g0425 391 ProSiteProfiles ELK domain profile. 271 291 IPR005539 GO:0003677
Lan4g0425 391 SMART ELK_2 271 292 IPR005539 GO:0003677
Lan4g0425 391 PANTHER - 2 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0425 Lan-Chr4 6414856 6421460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0425 136 391 Homeobox Transcription Factor Family AT1G62360 76.515 3.56e-125 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lan4g0425 KNOX2 8.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0425 - - lang:109345346 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0425 4 6414856 6421460 Lan19g0696 19 13036169 13043279 LSH