Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0413 ATGTCTTGCTCCAACCTCACCATGTTGGTGTCCTCTAAACCTTTATCTGATGCCTCTAACCTCTCCTTCAGTTCTGTCCTCAACCCTTTTCAGGTTCCTTCACAAAACTCCTTGTCATCCCCTACTACCCCTTCGCGGTCTTTGATTGCCCCTCTTCAGTGTGGCCTCAGAGAGCTCAGGACCCGTATTGATTCTGTCAAGAACACTCAAAAGATCACTGAGGCAATGAAGCTTGTGGCTGCTGCTAAAGTCAGAAGAGCTCAAGAAGCTGTTGTTAATGGAAGACCCTTCTCCCAGACACTTGTTGAAGTCCTTTACAACATCAATGAGCAGCTCCAAACCGAAGATATCGATGCCCCTCTCACAAAGGCTAGGCCTGTGAAGAAGGTTGCCCTTGTTGTTTGCACGGGTGATAGAGGTCTTTGTGGTGGTTACAACAATGCAATCTTGAAAAAAGCTGTGGGCAGAATAGCTGAGTTGAAGACTCTTGGTCTTGATTACACTATTATCAGTGTAGGTAAAAAGGGTAATACTTATTTCCTTCGTAGGCCTTATATTCCGGTCGATAAGTTTCTTGAAGGCGGCACGCTTCCAACCGCGAAAGAGGCTCAAGCAATTGCTGATGATACTTTTTCACTCTTTGTGAGTGAAGAGGTTGATAAAGTTGAGCTTTTGTACACAAAATTTGTTTCACTAGTTAAATCAGAGCCTGTGATTCATACCTTGCTTCCACTCTCACCAAAAGGAGAGATTTGTGATATTAATGGTGTTTGCGTTGACGCTGCTGATGATGAGTTTTTCAGGTTAACAACCAAAGAAGGAAAGTTAACTGTGGAAAGAGATGCTGTGAGGACTAAGACTTCAGATTTCTCACCTATTTTGCAGTTTGAGCAGGATCCAGTTCAGATCCTTGATGCACTTTTGCCTCTTTATTTGAACAGCCAGATTTTGAGGGCATTGCAGGAATCACTTGCAAGTGAGTTAGCTGCTAGAATGAGTGCTATGAGCAATGCAAGTGAGAATGCTAGTGAGTTGAAGAAGAACTTGTCTGTTCTCTACAATCGGCAACGTCAGGCTAAGATCACAGGTGAAATACTCGAAATTGTAGCTGGTGCCAATGCACTAGTATAG 1131 0.4359 MSCSNLTMLVSSKPLSDASNLSFSSVLNPFQVPSQNSLSSPTTPSRSLIAPLQCGLRELRTRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSQTLVEVLYNINEQLQTEDIDAPLTKARPVKKVALVVCTGDRGLCGGYNNAILKKAVGRIAELKTLGLDYTIISVGKKGNTYFLRRPYIPVDKFLEGGTLPTAKEAQAIADDTFSLFVSEEVDKVELLYTKFVSLVKSEPVIHTLLPLSPKGEICDINGVCVDAADDEFFRLTTKEGKLTVERDAVRTKTSDFSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAMSNASENASELKKNLSVLYNRQRQAKITGEILEIVAGANALV* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0413 376 Coils Coil 335 355 - -
Lan4g0413 376 Hamap ATP synthase gamma chain [atpG]. 53 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lan4g0413 376 PANTHER ATP SYNTHASE GAMMA CHAIN 1, CHLOROPLASTIC 1 376 - -
Lan4g0413 376 PRINTS ATP synthase gamma subunit signature 127 146 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lan4g0413 376 PRINTS ATP synthase gamma subunit signature 220 237 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lan4g0413 376 PRINTS ATP synthase gamma subunit signature 322 341 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lan4g0413 376 PRINTS ATP synthase gamma subunit signature 353 374 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lan4g0413 376 Coils Coil 369 376 - -
Lan4g0413 376 PANTHER ATP SYNTHASE GAMMA CHAIN 1 376 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lan4g0413 376 CDD F1-ATPase_gamma 56 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lan4g0413 376 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 55 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lan4g0413 376 Gene3D - 118 246 - -
Lan4g0413 376 ProSitePatterns ATP synthase gamma subunit signature. 361 374 IPR023632 -
Lan4g0413 376 Pfam ATP synthase 56 375 IPR000131 GO:0015986|GO:0045261|GO:0046933
Lan4g0413 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 274 375 - -
Lan4g0413 376 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 55 375 IPR035968 GO:0015986|GO:0045261|GO:0046933
Lan4g0413 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 55 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0413 Lan-Chr4 6336306 6337833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0413 23 375 Primary Pumps ATPases AT1G15700 68.539 1.11e-174 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0413 K02115 - gmx:100037480 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0413 4 6336306 6337833 Lan19g0677 19 12774142 12775708 LSH