Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0411 ATGGGTTGTGCTGGTAGCAAAGAGAAAAAACTCAGTTCAAAAATTTCAAATGCAAGTAGCACAAAAAAGCATCAAAATAGTTACCACCCCCTTCAATCTTTTACTACACAGAATAAATCATCATTATCATCACTATTAGATGATGAGAATAAGCAACAACAACAGGTTCCAATCACAGAACCTTCTTCAGAAAACATAAGTCAAGTGGTGAAGGAACAAGAACCCGCCATTCTAGGAAAACCCTTTGAAGATATCAAGAAGTACTACACTATTGGCAGGGAATTGGGTAGAGGGAAATTTGGGGTTACTCATTTATGTACTGAGAAGTCAACAAATTATACTTTTGCTTGTAAAACAGTTTTGAAGATGAAGCTTGAGTCCAAAAATGACAAAGAAGATATCAAGAGGGAGATTCAGATTTTGCAGCATTTGTCTGGCCAACCAAACGTTGTGGAGTTCAAGGGTGCTTATGAGGACCAGCATTCGGTGCATCTTGTCATGGAGCTTTGTACTGGTGGGGAACTTTTCGAGAAGATCATTTCTCAAGGGTACTATTCTGAGAGAGCTGCAGCATCAATTTGTAGAGAAATTGTTAATTTTGTCCACACTTGCCACTTCATGGGTGTGTTTCACCGCGATCTAAAGCCTGAGAATTTCTTGCTTTCTCTCAAGGGTGGGAGTGCAACCCTCAAGGCAACTGATTTTGGCCTATCTGTCTTCATTGAAGAAGGGAAAGTTTACAGTGATATGGTGGGTAGTCCTTACTATGTTGCTCCTGAAGTATTGCATCGTAGTTATGGAAAAGAAATAGATATTTGGAGTGCAGGTGTCATATTGTATATTCTCCTTAGTGGTGTACCTCCTTTTTGGGGTGAAAATGAAAAGGGAATATTTGATGCCATATTAGAAGGTGAAATTGACTATGACAGCCAACCATGGCCAACAATATCAAACAGTGCTAAAGATCTAGTTAGGAAGATGTTAACAAGGGATCCAAAGAAGAGGATTACTTCTGCTAAAGTCCTTGCACACCGATGGATCAAAAAAGGTGGAGAGGCATCTGATAAACCAATTGATAGTGCAGTTCTATCTAGAATGAAACAGCTCATAGCAATGAATAAGTTCAAGAAGGTTGTATTGCAGGTTATGGCTGAAAATTTATCTGATGAAGAGAGAAAAGGTCTCAAAGCCATGTTTGCAAACATGGACACTGACCATAGTGGCACTATCACCTATGAAGAACTGAAGAAAGGGTTGGCCCAAACTGGATCAAAATTGTCTGAGGCTGAAGTGAAGCAACTAGTGGAAGCTGCTGATATTGATGGGAATGGGTCAATTGACTATATAGAATTCATCTCAGCTACAATGCATAGGCACAAGCTTGAACTAGATGAAAACATTTACAAAGCATTCCAGTATTTTGATAAGGATAGCAGTGGCTATATTAGTAGAGATGAATTGGAAGCTGCTATGTCAGAACATGGAGTGGGCGATGAAGCTACAATAAAGGAAATAATTCTTGAGGTGGATACAGATGATGATGGAAAAATAAATTATGAGGAATTCCGTGCAATGATGAGAAGTGGAATGCAACCAGGGACAACAACTTTAAATATACAGTAA 1623 0.39 MGCAGSKEKKLSSKISNASSTKKHQNSYHPLQSFTTQNKSSLSSLLDDENKQQQQVPITEPSSENISQVVKEQEPAILGKPFEDIKKYYTIGRELGRGKFGVTHLCTEKSTNYTFACKTVLKMKLESKNDKEDIKREIQILQHLSGQPNVVEFKGAYEDQHSVHLVMELCTGGELFEKIISQGYYSERAAASICREIVNFVHTCHFMGVFHRDLKPENFLLSLKGGSATLKATDFGLSVFIEEGKVYSDMVGSPYYVAPEVLHRSYGKEIDIWSAGVILYILLSGVPPFWGENEKGIFDAILEGEIDYDSQPWPTISNSAKDLVRKMLTRDPKKRITSAKVLAHRWIKKGGEASDKPIDSAVLSRMKQLIAMNKFKKVVLQVMAENLSDEERKGLKAMFANMDTDHSGTITYEELKKGLAQTGSKLSEAEVKQLVEAADIDGNGSIDYIEFISATMHRHKLELDENIYKAFQYFDKDSSGYISRDELEAAMSEHGVGDEATIKEIILEVDTDDDGKINYEEFRAMMRSGMQPGTTTLNIQ* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0411 540 ProSiteProfiles EF-hand calcium-binding domain profile. 390 425 IPR002048 GO:0005509
Lan4g0411 540 SMART serkin_6 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0411 540 ProSiteProfiles EF-hand calcium-binding domain profile. 426 461 IPR002048 GO:0005509
Lan4g0411 540 PANTHER SERINE/THREONINE-PROTEIN KINASE 35 531 - -
Lan4g0411 540 SUPERFAMILY Protein kinase-like (PK-like) 87 354 IPR011009 -
Lan4g0411 540 SUPERFAMILY EF-hand 386 526 IPR011992 -
Lan4g0411 540 Pfam Protein kinase domain 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0411 540 Gene3D Phosphorylase Kinase; domain 1 91 174 - -
Lan4g0411 540 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 35 531 - -
Lan4g0411 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Lan4g0411 540 Gene3D - 355 529 - -
Lan4g0411 540 MobiDBLite consensus disorder prediction 10 70 - -
Lan4g0411 540 ProSitePatterns EF-hand calcium-binding domain. 439 451 IPR018247 -
Lan4g0411 540 ProSitePatterns EF-hand calcium-binding domain. 403 415 IPR018247 -
Lan4g0411 540 Gene3D Transferase(Phosphotransferase) domain 1 175 354 - -
Lan4g0411 540 ProSiteProfiles EF-hand calcium-binding domain profile. 497 532 IPR002048 GO:0005509
Lan4g0411 540 ProSiteProfiles EF-hand calcium-binding domain profile. 462 496 IPR002048 GO:0005509
Lan4g0411 540 Pfam EF-hand domain pair 465 527 IPR002048 GO:0005509
Lan4g0411 540 Pfam EF-hand domain pair 395 455 IPR002048 GO:0005509
Lan4g0411 540 MobiDBLite consensus disorder prediction 1 71 - -
Lan4g0411 540 CDD STKc_CAMK 89 346 - -
Lan4g0411 540 ProSiteProfiles Protein kinase domain profile. 89 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0411 540 ProSitePatterns EF-hand calcium-binding domain. 510 522 IPR018247 -
Lan4g0411 540 SMART efh_1 466 494 IPR002048 GO:0005509
Lan4g0411 540 SMART efh_1 430 458 IPR002048 GO:0005509
Lan4g0411 540 SMART efh_1 501 529 IPR002048 GO:0005509
Lan4g0411 540 SMART efh_1 394 422 IPR002048 GO:0005509
Lan4g0411 540 ProSitePatterns Protein kinases ATP-binding region signature. 95 122 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0411 Lan-Chr4 6299850 6303990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0411 1 532 EF-hand Containing Proteins AT4G04720 67.730 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lan4g0411 Pkinase 4.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0411 K13412 - gmx:100816859 766.148