Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0406 ATGATGCAACAAGGAGGAGGCATCGCACCACCAAACCTAGGTCAACAACCTTACGTCATGTTACCACCTCAGCCTCAGGCTCCGGCCCTATGGCAACAACAACAACCGTCTCAGTCTGTTGCTCCGCCGCAACAACTGCCGTCTCAGCCTCAAAGCGCCGATGAAGTCCGTACTCTATGGATCGGTGATTTGCAGTACTGGATGGATGAGAACTATCTATATCAATGCTTTGCTCACACCGGAGAGGTGGCCTCTGTGAAAGTTATTCGTAATAAGCAAACTAATCAATCAGAAGGCTATGGTTTTATTGAGTTCAATAGTCGTGCTGGTGCTGAGAGAGTACTTCAAAGTTACAATGGAGCTATTATGCCCAATGGTGGGCAGCCCTTCAGGTTGAACTGGGCAACTTTCAGTGCGGGTGAGAGGCGTAACGATGACAGTCCCGATTACACCATATTTGTTGGTGACTTGGCTGCAGATGTCACTGACTATCTCCTAACAGAGACATTTAGGTCTCGTTTTAACTCGGTTAAGGGTGGAAAAGTTGTGATTGATAGGCTCACTGGCCGGACCAAGGGTTATGGTTTTGTGAGGTTTGCAGATGAAAGTGAACAAGTGAGGGCTATGACTGAGATGCAAGGTGTTCTTTGTTCAACAAGGCCCATGAGGATTGGACCAGCTGCTAATAAAAACATAGGCACACCACAAAAAGCTTCATATCAGAATCCTCAAGGCCAAGGCTCTCAGAACGAGAATGATCCAAATAATACAACTATTTTTGTCGGAAATTTGGATCCTAACATCACCGATGATTATCTGAGGCAAGTTTTTGGCCAGTATGGAGAGTTAGTTCATGTGAAAATTCCATCAGGCAAGCGATGTGGGTTTGTCCAATTTGCAGACAGGAGCTCTGCAGAAGAGGCACTACGGGTTTTAAATGGAACAGTGTTGGGTTCACAAAATGTTCGCCTTTCATGGGGCCGTAGTCCTTCAAACAAACAGGCTCAGCCAGATGCAAACCAGTGGAATGGTGCCGGTGCTGGTGGATATTACGGATATCCTCAGCAAGGTTATGAAAATTATGGTTATGCTGCTCCTGCTCCTGCTGCCGCTGCACCGCAGGATCCTAACTTATATGGCAGTTATCCTGCAGGGTATGCCAATTACCAACCACCACAGCAACAGCAGCAAATAGGATATAGTTAA 1206 0.4652 MMQQGGGIAPPNLGQQPYVMLPPQPQAPALWQQQQPSQSVAPPQQLPSQPQSADEVRTLWIGDLQYWMDENYLYQCFAHTGEVASVKVIRNKQTNQSEGYGFIEFNSRAGAERVLQSYNGAIMPNGGQPFRLNWATFSAGERRNDDSPDYTIFVGDLAADVTDYLLTETFRSRFNSVKGGKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPAANKNIGTPQKASYQNPQGQGSQNENDPNNTTIFVGNLDPNITDDYLRQVFGQYGELVHVKIPSGKRCGFVQFADRSSAEEALRVLNGTVLGSQNVRLSWGRSPSNKQAQPDANQWNGAGAGGYYGYPQQGYENYGYAAPAPAAAAPQDPNLYGSYPAGYANYQPPQQQQQIGYS* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0406 401 MobiDBLite consensus disorder prediction 226 260 - -
Lan4g0406 401 SMART rrm1_1 58 133 IPR000504 GO:0003723
Lan4g0406 401 SMART rrm1_1 258 325 IPR000504 GO:0003723
Lan4g0406 401 SMART rrm1_1 151 225 IPR000504 GO:0003723
Lan4g0406 401 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 15 398 - -
Lan4g0406 401 CDD RRM3_NGR1_NAM8_like 256 327 - -
Lan4g0406 401 MobiDBLite consensus disorder prediction 387 401 - -
Lan4g0406 401 MobiDBLite consensus disorder prediction 381 401 - -
Lan4g0406 401 CDD RRM1_SECp43_like 58 138 - -
Lan4g0406 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 257 329 IPR000504 GO:0003723
Lan4g0406 401 SUPERFAMILY RNA-binding domain, RBD 243 355 IPR035979 GO:0003676
Lan4g0406 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 15 398 - -
Lan4g0406 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 259 322 IPR000504 GO:0003723
Lan4g0406 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 152 215 IPR000504 GO:0003723
Lan4g0406 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 59 124 IPR000504 GO:0003723
Lan4g0406 401 Gene3D - 232 339 IPR012677 -
Lan4g0406 401 Gene3D - 19 144 IPR012677 -
Lan4g0406 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 150 229 IPR000504 GO:0003723
Lan4g0406 401 SUPERFAMILY RNA-binding domain, RBD 56 231 IPR035979 GO:0003676
Lan4g0406 401 CDD RRM2_SECp43_like 149 228 - -
Lan4g0406 401 Gene3D - 149 225 IPR012677 -
Lan4g0406 401 MobiDBLite consensus disorder prediction 1 54 - -
Lan4g0406 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 137 IPR000504 GO:0003723
Lan4g0406 401 MobiDBLite consensus disorder prediction 232 260 - -
Lan4g0406 401 MobiDBLite consensus disorder prediction 27 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0406 Lan-Chr4 6250306 6254548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0406 59 339 Eukaryotic Initiation Factors Gene Family AT4G34110 24.739 8.37e-23 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0406 - - gmx:100801562 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0406 4 6250306 6254548 Lan19g0670 19 12667516 12671607 LSH
Lan4g0406 4 6250306 6254548 Lan16g0400 16 3894011 3899157 LSH
Lan12g1314 12 18824492 18827764 Lan4g0406 4 6250306 6254548 PCT