Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0398 ATGGCAACTTTTACATCTTCATCTTCATCAATGTCACAGATTCCAGTTCCACCCATTTCAGCTCCATCATCATCATCATCTTCTTCAGCTTTTGATGACTCTTATGAAGACTCTTGCAGTATATGTCTTGAACCCTTTAACATCAATGACCCATCCACTCTTACATGTTGCAAACACGAATATCACCTGCATTGCATTCTTGAATGGTCACAGAGAAGCAAAGAGTGTCCAATATGTTCTCAATTTCTTGCTTTGAAAGACCCTTCCAGCCAAGAGCTTCTTGCTGCAGTGGAGGCTGAGAAACACTTGAGATCAAGGAACATATACTCATCTTCATTCACTAGCTCCCGTCTCCCCCTTAATCGTAATGATCACCATGATGATTCTTCCTCAGATGACTCTGGCTTTGACGAACAAATTATGCAACACCTAGTTGCTGTGGCTGAAAGTAGAGCTCATTTTGTTCACAGGCGAGAAAGGCAGAGATCGTCTGGAGTAGGCTCTTCAGAGGTTCTTGTTTTTAACTCTCCGGTGCATTTTTCGGGGATTCAACCAGTCCTTTCAACCTCACCATCTGGGGGAAGTTCACCAATTTCTGGTGTGCCCTCTGCTGTTGACATTCAACCACCCACATCTGTGTTCTCCCCTGTTAATGAGGCTGCAACAAATACTACTCTCCATAGTGATGCCCCTTTCAGACCCAGAGTTTTCTATAGCCAGACAGCACCTGAGAATGCGAGGAGAATAAACACTTCTGAGATGTTCTCTGTCCCTGAGTCTTTCAAATCCAAGTTTTCTGCTGCTTCAGCCAGATATAAGGAATCAATTTCCAAAAGTACACGTGGCCTTAAGGAGAAATTACTTGCTCAAAATGCCTCAGTAAAAGAGCTTAGTAAAGGTGTTCAACGTGAGATGAATGCAGGCATAGCTAGTGTTACACGGATGATTGAACGTCTTGATCTTACCTCAAAACGGCCCACTTCTCCTCTTATACCTGTCCAGAATGAGGGAACTTCAGCGTTCCCTGTAAAAGGGAAGTCTATTGAAGAACGTGGAGATATGGTCCATGATGTTGGTTTGGATGCTCCCTCACCCGTTTCTCGCATGGTTGCTAGTCATGTAGAAATTCCTCCACATGTTCAGAGTGGACAAGATGCCCTGAAGACTTAA 1170 0.4385 MATFTSSSSSMSQIPVPPISAPSSSSSSSAFDDSYEDSCSICLEPFNINDPSTLTCCKHEYHLHCILEWSQRSKECPICSQFLALKDPSSQELLAAVEAEKHLRSRNIYSSSFTSSRLPLNRNDHHDDSSSDDSGFDEQIMQHLVAVAESRAHFVHRRERQRSSGVGSSEVLVFNSPVHFSGIQPVLSTSPSGGSSPISGVPSAVDIQPPTSVFSPVNEAATNTTLHSDAPFRPRVFYSQTAPENARRINTSEMFSVPESFKSKFSAASARYKESISKSTRGLKEKLLAQNASVKELSKGVQREMNAGIASVTRMIERLDLTSKRPTSPLIPVQNEGTSAFPVKGKSIEERGDMVHDVGLDAPSPVSRMVASHVEIPPHVQSGQDALKT* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0398 389 Pfam Ring finger domain 37 79 IPR001841 -
Lan4g0398 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 110 IPR013083 -
Lan4g0398 389 SMART ring_2 39 79 IPR001841 -
Lan4g0398 389 ProSiteProfiles Zinc finger RING-type profile. 39 80 IPR001841 -
Lan4g0398 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 339 - -
Lan4g0398 389 MobiDBLite consensus disorder prediction 1 28 - -
Lan4g0398 389 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 339 - -
Lan4g0398 389 SUPERFAMILY RING/U-box 35 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0398 Lan-Chr4 6195710 6198915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0398 33 87 C3H Transcription Factor Family AT4G00335 45.455 8.74e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0398 K19043 - gmx:100775754 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0398 4 6195710 6198915 Lan16g0406 16 3947667 3950856 LSH