Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0384 ATGGCTTCCATAGCTTTCAGAAACCAATCCTCTAAACACCTTCTATTCTCATTCCCTTTCATATCTTCTTATCATTCATTTTCTTCAACCAATGCACCTCCATCATGGCCTCTTGTTTCTCTCCACAGATCCATGGCCACTTTCACTAGAACAAAGCCTCATCTTAATGTGGGCACCATTGGCCATGTTGATCATGGAAAAACGACACTAACTGCTGCAATTACAAAGGTGCTAGCTGATGAAGGTAAAGCAAAGGCAATAGCCTTTGAGGAGATTGACAAAGCTCCTGAGGAGAAGAAAAGAGGAATTACTATTGCCACGGCTCATGTAGAGTATGAGACGACAAAGAGGCATTATGCTCATGTTGATTGTCCAGGACATGCAGATTATGTTAAGAACATGATAACTGGAGCTGCACAAATGGATGGTGGAATTCTAGTGGTTTCTGCTCCAGATGGGCCAATGCCCCAAACAAAGGAACATATACTGCTTGCGCGTCAGGTTGGTGTTCCGTCACTAGTCTGCTTTCTAAATAAGGTTGATGCTGTTGATGACCCAGAGTTACTTGAACTTGTTGAAATGGAGCTTCGTGAGTTGCTTAATTTCTACAAATTTCCCGGGGATGAGATCCCAATCGTACGAGGTTCAGCCCTGTCTGCCTTGCAGGGGACAAATGAAGAACTTGGAAAGAAGGCTATCTTAAAACTAATGGATGCTGTCGATGAATATATTTCTGACCCTGTGCGACAGCTTGATAAGCCATTCTTAATGCCAGTAGAAGATGTTTTCTCAATTCAGGGGCGTGGAACTGTTGTGACTGGTCGTGTCGAACAAGGCACCATCAAAGTTGGAGAGGAGGTAGAAGTATTGGGACTAACACAGGGTGGGCCTTTGAAGACTACTGTAACTGGTGTGGAAATGTTCAAGAAAATTTTGGATCACGGGCAAGCTGGTGATAATGTGGGACTTCTACTACGTGGTTTGAAGCGTGATGATGTACAGCGAGGAATGGTAGTCACCAAGCCTGGTGCATTGAAAACATATAAGAAATTTGAAGCAGAGATCTATGTCCTCTCAAAAGACGAAGGTGGCCGTCATACAGCATTTTTCTCTAATTATATGCCTCAGTTTTACCTGAGGACTGCAGATATTACCGGAAAGGTGCAACTACCTGAGAATGTTAAGATGGTTATGCCCGGCGATAACGTGACCGCAACTTTTGAGTTGATGTCAGCTGTTCCTCTTGAAACAGGACAAAGATTTGCTTTGAGAGAGGGAGGCAGAACAGTTGGTGCAGGAGTTGTCTCCAAAGTGATTACCTAG 1323 0.4384 MASIAFRNQSSKHLLFSFPFISSYHSFSSTNAPPSWPLVSLHRSMATFTRTKPHLNVGTIGHVDHGKTTLTAAITKVLADEGKAKAIAFEEIDKAPEEKKRGITIATAHVEYETTKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLNFYKFPGDEIPIVRGSALSALQGTNEELGKKAILKLMDAVDEYISDPVRQLDKPFLMPVEDVFSIQGRGTVVTGRVEQGTIKVGEEVEVLGLTQGGPLKTTVTGVEMFKKILDHGQAGDNVGLLLRGLKRDDVQRGMVVTKPGALKTYKKFEAEIYVLSKDEGGRHTAFFSNYMPQFYLRTADITGKVQLPENVKMVMPGDNVTATFELMSAVPLETGQRFALREGGRTVGAGVVSKVIT* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0384 440 CDD EFTU_II 255 343 IPR033720 -
Lan4g0384 440 Gene3D Translation factors 250 380 - -
Lan4g0384 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 270 IPR027417 -
Lan4g0384 440 CDD EFTU_III 346 435 - -
Lan4g0384 440 PANTHER ELONGATION FACTOR TU-RELATED 29 439 - -
Lan4g0384 440 SUPERFAMILY Translation proteins 249 345 IPR009000 -
Lan4g0384 440 TIGRFAM small_GTP: small GTP-binding protein domain 56 193 IPR005225 GO:0005525
Lan4g0384 440 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 93 108 IPR031157 -
Lan4g0384 440 TIGRFAM EF-Tu: translation elongation factor Tu 44 439 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lan4g0384 440 Pfam Elongation factor Tu C-terminal domain 345 438 IPR004160 -
Lan4g0384 440 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 349 439 IPR009001 -
Lan4g0384 440 Gene3D Translation factors 384 439 - -
Lan4g0384 440 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 52 248 IPR000795 GO:0003924|GO:0005525
Lan4g0384 440 PRINTS GTP-binding elongation factor signature 56 69 IPR000795 GO:0003924|GO:0005525
Lan4g0384 440 PRINTS GTP-binding elongation factor signature 100 108 IPR000795 GO:0003924|GO:0005525
Lan4g0384 440 PRINTS GTP-binding elongation factor signature 120 130 IPR000795 GO:0003924|GO:0005525
Lan4g0384 440 PRINTS GTP-binding elongation factor signature 136 147 IPR000795 GO:0003924|GO:0005525
Lan4g0384 440 PRINTS GTP-binding elongation factor signature 173 182 IPR000795 GO:0003924|GO:0005525
Lan4g0384 440 Pfam Elongation factor Tu GTP binding domain 52 245 IPR000795 GO:0003924|GO:0005525
Lan4g0384 440 Hamap Elongation factor Tu [tuf]. 43 440 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lan4g0384 440 Pfam Elongation factor Tu domain 2 269 340 IPR004161 GO:0005525
Lan4g0384 440 CDD EF_Tu 53 247 IPR041709 -
Lan4g0384 440 Gene3D - 44 247 IPR027417 -
Lan4g0384 440 PANTHER ELONGATION FACTOR TU 29 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0384 Lan-Chr4 6067136 6071147 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0384 50 438 Eukaryotic Initiation Factors Gene Family AT5G60390 30.345 6.17e-45 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0384 K02358 - gmx:102667962 762.681