Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0373 ATGTATTTTTTCTATCTTAATTTTATCTTTATGCGTTGGTTGATTGATTTTGTCTATATCTCAACGTTTCAGGAAGTTATTTACAGTACCGTTGCAACACTGATATATAGAGCTGAAATGGCATCAAAGGGTACAAGTGGTGGCAGAAAAGGAAGGAGGAATAAGAAAAAATTGAGGGTTGATCCATCTTCATTGGAGCCAAACAAGATTGTTCCTTCACCTCAACATGAAAGTACAGAATATGAATTCTCTAGTGTGAAACATGAAATGAGCCCAGGTCAAGTGCAAGCAGCTGCTTCTAAGTTGCTTAATGTTAGCCAAGGTAATTCGAGTCGGTCGGAACTTGACTTTGCATTGACTAATGCTGTAGATGCATTGGAGCTCAGGCTTAACCGAAGGACAGAGGGAAATGGGGCGGATGGTTGCCCGGATTTTAAGAGGAAAGAACTAACAGAAGCCAGGTTGGAAGAACTTATCCTTGCTGATTTGCACATCAGATTTACGAGACTAATAAAAAAAATTGCTGCACTTAGCTCCTGCACTGAAGAAGCTGCTACTAAGGCCATGTTAAGGTTTTCCAATTGTTCTGGTGGTAGTGATACTTTTTCTAATATATTTGATAATACTTTAGCATTTCTTAGAAATGGCCAAGAGATTGATCTTTCAAAAGAGCACTGTTTCGAAGATTTAGTGCACCTTGAGAAGTATGTCATAGCTGAAATGGTCTGTATTCTTCAAGAGGTTAGGCCACCCTTAAGTGTTCGAGATGCCTTGTGGCGTTTGTTAGTTTTTGACCTGAATCTGTTACAAGCTTGTGAAGTGGACACTGAGCCTTTAAGCTGTTTACGATGCCACCACAGAACTTCTGATGGCTGTTCTTCTGTCCAAACTGAATCACAATCGAAATTAGAAGCACAAGGTCATGAATTGAAGCTTCCAATTCCTTTTAAATCAGTTCCCTCAGGAAATCCTGGTGCTCAAAATTTAAAGAATTCTCAAGTTCTTGGTGGACTCTCAGAGAAAGAGGGTGATTCTGTTGATAAATCACTTAGTACTGCTGCAACATCTCAATCTCACCGGATGGTAGAATTGTGTGGATGTTTTAGAAAGTTCCATTCCAATTGCACTAATAGGGACTACACTCTTCGGCAGAAGTTCATTGTGGAAAAAACAAGACCGGCAAATGGGCCTAGAGGGCCTTCAAAAACAGGAAAGGTGGCCAGCTTGAATGCTTTGATCTTGAATAAAAATGTTAAATCTGTAATGGAAACTACTACTATAAACTCGAAGAGTGCATCATCGTCAAATATAAGCAACACTGTGGGACTTGATCGGAGTGAAGACAGGTCTTCCACAAGTCCTATCCGGTGCAATAATGAGGATCCTAATAGTGATTGTTTGAGGATACCAGACAACAAGTCTCTGACAGAATGGATACCCCAGGAGAATAAGGATGAATTGATTTTGAAGCTGGTTCCAAAGGTTCAGGAGCTTCAAGATGAGATTAAGAAATGGACAGAGTGGGGTAATGAGAAGGTTATGCATGCTGCGAATGAGCTAAGCAAAGACAAGGATCTGCTAACGACGCTAAAGAAAGAACGAGACGAAAACGAGCAACTTCTGAAAGAGAGGCAATATCTAGAGGAGAGCAGCTTGAGGAGGATTTCTGAGATGGAAAGTGCATTGGATAATGCGAGAGACAAGGTGGGACTAGCTAATGCCACTGTCCGGAAACTTGAGGCACAGAAAGCTGCTTTCAAGAAAGAAATGGAGGCTGCTAATTTACGTGCAGCCGAATCAGCAAAAAGTTTCCAAGAGGGCTTAAAGAGGGAGAAGGATACACAACTTAAGATCCAGTCAGAAGACAAGGAGAAATCCTTGTTTCAGGAAATACTGGTGACTGAGAAACATAAATTCGCTCAGCTGCAACAGGAATTAAAGCAAGCAAAAGAAAAAAAGGAGCAAGCTGAGGTTAGATGGCGGCAGGCAAGAAAGGCAACAGAAGAAGTTCTCCAGCGAGCCAGTTCTATAAGAAAAGAACGAGAGAGAAATGAGGAGGCAACAAAATACAAGGAGGAGCAGATGAAACTGAAAGCAGAAAAGAGTCTGCAGAGTTATGAAGCTGATATAAAGAAATATGAAGAAGAAATTGCGGAACTTAGAAGGAAGGAGAACAATTCAAAAATTGCTGCAATAAGAAGCGAAATTGGCGATGAAGAAGCATGGAACACTTTTGTGGCCGAACTGGTTACAGATATGAATGACTTTTCTTTGTCGGGTAGGGTAAAACGCGAAAGAGAATGCGTTATGTGCCTGTATAAGGAGATTTCTGTTGTATTTCTTCCATGTGCTCATCAGGTTGTTTGTGAAGAATGCAATGAGCTCCTTGTGAATCAAGGCATGCAAGATTGTCCTTCTTGCAGGACTCCTATCCAGAAGCGTATGTCTGTACGCCATGCCGTAAGAGGCCAATCTTATGTTTTCGGCTGA 2490 0.4116 MYFFYLNFIFMRWLIDFVYISTFQEVIYSTVATLIYRAEMASKGTSGGRKGRRNKKKLRVDPSSLEPNKIVPSPQHESTEYEFSSVKHEMSPGQVQAAASKLLNVSQGNSSRSELDFALTNAVDALELRLNRRTEGNGADGCPDFKRKELTEARLEELILADLHIRFTRLIKKIAALSSCTEEAATKAMLRFSNCSGGSDTFSNIFDNTLAFLRNGQEIDLSKEHCFEDLVHLEKYVIAEMVCILQEVRPPLSVRDALWRLLVFDLNLLQACEVDTEPLSCLRCHHRTSDGCSSVQTESQSKLEAQGHELKLPIPFKSVPSGNPGAQNLKNSQVLGGLSEKEGDSVDKSLSTAATSQSHRMVELCGCFRKFHSNCTNRDYTLRQKFIVEKTRPANGPRGPSKTGKVASLNALILNKNVKSVMETTTINSKSASSSNISNTVGLDRSEDRSSTSPIRCNNEDPNSDCLRIPDNKSLTEWIPQENKDELILKLVPKVQELQDEIKKWTEWGNEKVMHAANELSKDKDLLTTLKKERDENEQLLKERQYLEESSLRRISEMESALDNARDKVGLANATVRKLEAQKAAFKKEMEAANLRAAESAKSFQEGLKREKDTQLKIQSEDKEKSLFQEILVTEKHKFAQLQQELKQAKEKKEQAEVRWRQARKATEEVLQRASSIRKERERNEEATKYKEEQMKLKAEKSLQSYEADIKKYEEEIAELRRKENNSKIAAIRSEIGDEEAWNTFVAELVTDMNDFSLSGRVKRERECVMCLYKEISVVFLPCAHQVVCEECNELLVNQGMQDCPSCRTPIQKRMSVRHAVRGQSYVFG* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0373 829 SUPERFAMILY RING/U-box 767 816 - -
Lan4g0373 829 MobiDBLite consensus disorder prediction 427 463 - -
Lan4g0373 829 Pfam Zinc finger, C3HC4 type (RING finger) 765 813 - -
Lan4g0373 829 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 752 818 IPR013083 -
Lan4g0373 829 Coils Coil 523 596 - -
Lan4g0373 829 ProSiteProfiles Zinc finger RING-type profile. 768 808 IPR001841 -
Lan4g0373 829 Pfam Family of unknown function (DUF6592) 182 274 IPR046527 -
Lan4g0373 829 MobiDBLite consensus disorder prediction 43 77 - -
Lan4g0373 829 PANTHER OS05G0141500 PROTEIN 449 820 IPR046934 -
Lan4g0373 829 PANTHER OS05G0141500 PROTEIN 45 445 IPR046934 -
Lan4g0373 829 PANTHER OS05G0141500 PROTEIN 449 820 - -
Lan4g0373 829 PANTHER OS05G0141500 PROTEIN 45 445 - -
Lan4g0373 829 Coils Coil 632 666 - -
Lan4g0373 829 Coils Coil 696 730 - -
Lan4g0373 829 MobiDBLite consensus disorder prediction 427 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0373 Lan-Chr4 5980404 5984109 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0373 680 817 C3H Transcription Factor Family AT1G73950 25.532 2.38e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0373 - - lang:109345292 1582.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1300 12 18729062 18733268 Lan4g0373 4 5980404 5984109 PCT
Lan1g0991 1 20388240 20392535 Lan4g0373 4 5980404 5984109 PCT
Lan1g0021 1 101362 105509 Lan4g0373 4 5980404 5984109 PCT
Lan4g0373 4 5980404 5984109 Lan12g1300 12 18729062 18733268 PCT
Lan4g0373 4 5980404 5984109 Lan1g0991 1 20388240 20392535 PCT
Lan4g0373 4 5980404 5984109 Lan1g0021 1 101362 105509 PCT