Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0361 ATGCCCATCATGATAAGAACCATAATCAACGACCTCAAATCTCGTTCCCAGCGTGTGGTGCAAGACGCTTCTTCAATGGATTCGGTTAGCGACGGTTTGCTTCAGAGTTGTTGGGCCCACATGCCGCAGGAATTACTGAGAGAAGTGCTTATCAGAATCGAAGCTTCGGAGGACACGTGGCCTCAGAGGAAGAGTGTTGTTGCGTGTGCTGGAGTATGCCGTAGCTGGAGACACATCACTAAAGAAATTGTTAAGATACCTCAGTTTTCTTCGATGATCACCTTCCCCATTTCTGTTAAGCAGCCTGGCCCCAGGGAGCATCTCCTCCAGTGCTTTATAAAGCGCAACCGAGCCACCCAAACATATCACTTGTATCTCAGTTTAACTACACTATTTGATGATGGGAAGTTCCTTCTGTCTGCACGCAAGTGCAGACACCCCGCCGGCACAGATTATATGATCTCTCTAGATTCAAATGATGGTTCAAAGGGAAGCAACAACCATGTTGGGAAACTGAGATCAAATTTTGTTGGAACCAAGTTTACAATCTATGATGACCAACTGCCTCATCCAGGGGCAAAGGTTACAAAAAGTCGCTCCACTAGGTTGGCGAATCTAAAACAAGTTTCTCCCAAGGTTCCTACAGGCAACTATCCTGTGGCACACATCTCGTATGAGTTGAATGTGCTTGGCTCCAGGGGGCCTAGGAGAATGCACTGTGCCATGGATACCATTCCTGCATCTGCAATTGAACCAGGAGGGATAGCCCCTACACAGACTGAGTTTTCTCTTAAAAATTTAGATATGTTTCCTTCATTCTCTTTTTCTCGATCAAAATCAAATGACGAGGAAAACTCCGTATCTGGACATCTGGGTGATCAAAATGATGGGGTGTTAGTGTTGAAAAACAAGGCTCCAAGGTGGCACGAGCCACTGCAGTGTTGGTGCTTAAACTTTCATGGACGGGTGACAATTGCATCAGTTAAAAACTTTCAGCTGGCGGCTTCCCCGGAAAACGGACCTGCTGGACCAGAGCATGATAAGATCATTCTCCAATTTGGAAAAGTCGGGAAGGATGTGTTTACGATGGATTACCGGTACCCTCTATCAGCATTTCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATAG 1170 0.4607 MPIMIRTIINDLKSRSQRVVQDASSMDSVSDGLLQSCWAHMPQELLREVLIRIEASEDTWPQRKSVVACAGVCRSWRHITKEIVKIPQFSSMITFPISVKQPGPREHLLQCFIKRNRATQTYHLYLSLTTLFDDGKFLLSARKCRHPAGTDYMISLDSNDGSKGSNNHVGKLRSNFVGTKFTIYDDQLPHPGAKVTKSRSTRLANLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCAMDTIPASAIEPGGIAPTQTEFSLKNLDMFPSFSFSRSKSNDEENSVSGHLGDQNDGVLVLKNKAPRWHEPLQCWCLNFHGRVTIASVKNFQLAASPENGPAGPEHDKIILQFGKVGKDVFTMDYRYPLSAFQAFAICLSSFDTKIACE* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0361 389 Pfam F-box domain 38 84 IPR001810 GO:0005515
Lan4g0361 389 Pfam Tub family 99 384 IPR000007 -
Lan4g0361 389 SUPERFAMILY F-box domain 36 82 IPR036047 GO:0005515
Lan4g0361 389 ProSitePatterns Tub family signature 1. 319 332 IPR018066 -
Lan4g0361 389 ProSitePatterns Tub family signature 2. 374 389 IPR018066 -
Lan4g0361 389 PANTHER TUBBY-RELATED 5 389 - -
Lan4g0361 389 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 5 389 - -
Lan4g0361 389 SUPERFAMILY Tubby C-terminal domain-like 87 389 IPR025659 -
Lan4g0361 389 Gene3D Tubby Protein; Chain A 95 389 IPR025659 -
Lan4g0361 389 PRINTS Tubby superfamily signature 152 168 IPR000007 -
Lan4g0361 389 PRINTS Tubby superfamily signature 168 192 IPR000007 -
Lan4g0361 389 PRINTS Tubby superfamily signature 217 244 IPR000007 -
Lan4g0361 389 PRINTS Tubby superfamily signature 301 318 IPR000007 -
Lan4g0361 389 PRINTS Tubby superfamily signature 319 335 IPR000007 -
Lan4g0361 389 PRINTS Tubby superfamily signature 346 365 IPR000007 -
Lan4g0361 389 PRINTS Tubby superfamily signature 367 389 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0361 Lan-Chr4 5876991 5894109 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0361 13 389 TUB Transcription Factor Family AT2G47900 70.341 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lan4g0361 Tub 7.7e-108 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0361 K19600 - gmx:100778346 645.966