Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0357 ATGTCCACCTCTAGAACCTCAAATACCTCCCCTAAAGGAAACACCAACCAAACCCAAATGAACTCATTTTTTCTTCAACTCAACACATCATCTCCTAATGAAAGAAGAGGTAGAAGAAAACAAGCAGAACCAGGAAAGTTTCTTGGTGTAAGAAAACGCCCTTGGGGTAGATATGCTGCTGAAATTAGAGACCCTACAACCAAAGAAAGACATTGGCTTGGAACATTTGACACTGCTGAAGAAGCAGCTATTGCTTATGATAGAGCTTCTATCTCCATGAAAGGTAGCCAAGCTAGAACAAACTTCATTTATTCTGATAATAATAATAATAATAATAATAACACCATTTTTCACAATTTCATTACTCCTATGGAAGAAGTTCAATCTCTTTTACCAACTCCACAGTTCATCACAAACACTCAAAGTCAAAATGCTATATGTGATGAAACTGTATATGGATCAAAACCAATATTGGATGATAGTTTTTTCTTCTCCAATGATTCTAATAACAACTCTGGCTATTTGGAATGCATAGTTCCTGATAGTTGCTTAAGACCTGTTTCCATGCAAAGCAATGTTAATGCTTTAGAGGCTCATTCACATTTTGACAACACTGCATTTTCTCAAGGAGCCTTAAACATGCAAACAACAATGCAAGCTTCTAACTTTGGAGGTTTTTCTTACCAAAGTGAACCTAGTCAAGGATTCTTGGATGATAAGCAATCATGGAATTGCAATTCTAGTGAACTTTCAGCTATATTTAACAAACCATTAAGGACTGAAGATGGGTACTGCATGGCTGCATTGTGTCCTATCAGTGAAAGTTCAAACTATGGGACTGTTTCTTCATGTTCTCCATCACTACCTCCTCCCTTTGGGGATGTTGACTTGGGATACTCACCCTTCTAA 909 0.3729 MSTSRTSNTSPKGNTNQTQMNSFFLQLNTSSPNERRGRRKQAEPGKFLGVRKRPWGRYAAEIRDPTTKERHWLGTFDTAEEAAIAYDRASISMKGSQARTNFIYSDNNNNNNNNTIFHNFITPMEEVQSLLPTPQFITNTQSQNAICDETVYGSKPILDDSFFFSNDSNNNSGYLECIVPDSCLRPVSMQSNVNALEAHSHFDNTAFSQGALNMQTTMQASNFGGFSYQSEPSQGFLDDKQSWNCNSSELSAIFNKPLRTEDGYCMAALCPISESSNYGTVSSCSPSLPPPFGDVDLGYSPF* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0357 302 MobiDBLite consensus disorder prediction 1 46 - -
Lan4g0357 302 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Lan4g0357 302 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Lan4g0357 302 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Lan4g0357 302 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 302 - -
Lan4g0357 302 MobiDBLite consensus disorder prediction 1 32 - -
Lan4g0357 302 Pfam AP2 domain 47 95 IPR001471 GO:0003700|GO:0006355
Lan4g0357 302 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Lan4g0357 302 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Lan4g0357 302 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 302 - -
Lan4g0357 302 SUPERFAMILY DNA-binding domain 46 104 IPR016177 GO:0003677
Lan4g0357 302 CDD AP2 46 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0357 Lan-Chr4 5833878 5834985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0357 1 186 AP2-EREBP Transcription Factor Family AT5G18560 44.309 2.18e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan4g0357 AP2 2.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0357 - - gmx:100812047 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0357 4 5833878 5834985 Lan16g0466 16 4583529 4584555 LSH
Lan12g1290 12 18682894 18683902 Lan4g0357 4 5833878 5834985 PCT
Lan1g0045 1 247089 248487 Lan4g0357 4 5833878 5834985 PCT
Lan4g0357 4 5833878 5834985 Lan12g1290 12 18682894 18683902 PCT
Lan4g0357 4 5833878 5834985 Lan1g0045 1 247089 248487 PCT