Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0356 ATGGAGCGCTTTGCCCGGTCCACTGAAGGCTCTCACTCTGATCCGTCGCCGGAATGGACCGGACCCGCCGCCGAAACCGGCCTCGAAGGGTCTATGTGGCAATTGGGATTAGGTGGTGATGGTGGTGGCGGCGGCGGAGAGGAATCGTACCCGCTACGGCCCAGTGAGGCAGATTGTATGTACTATTTAAGGACCGGAGTCTGTGGCTATGGCTCTCGTTGCCGATTCAACCATCCTCCTGACTGTGTCGTGGTTATCGAAGCTGCAAGGACCGGTGATTTTCCAGAACGAGTAGGCCAGCCTGTGTGCCAGTATTATATGAGGACAGGATCATGCAAATTTGGTCCATCCTGCAAGTACCACCATCCAAAGGAGGGAGGAGGCACTGCAAACCCTGTCTCGCTAAATTATTATGGATATCCATTGCGACCGGGTGAGAAAGAGTGTTCCTACTATGTGAAGACGGGGCAATGCAAGTTTGGTTCAACTTGCAAGTTCCATCATCCACAACCTGCTGGTATCCAAATTCCACCACTGCCACCGCCAGTTCCCCAAGTTTCACATTTATCCATGCCTGTGCCTTCACCATTATATCCAACTGTACCACCTCCATCTGGTCATTCACCACAACAATTTGGTTTACTGGTTGCAAGGCCACCTCTGCTGCCTGGATCATATGTCCAGAGCCCCTATGGTCCTGTGCTACTGTCCCCTTCCATGGTCCCTTATTCAGGCTGGGCTCCTTATCAGGCTACTGCTACAAGCCCTGTACTTCCTTCAAGTACTCCATCTAATGTTGGGTCAGCACAGTTCTATGGGATAACCCAGCTACCTTCATCAGCAGGTGCCTATGCTGGACCTTATCAACCTTCTGATTCCTTAATTGGTCCTTCAAGCAGTAGTCAGAAGGAGCACTCACTTCCAGAAAGACCTGATCAACCAGAATGTCAGTATTACATGAGAACAGGGGAGTGCAAATTTGGTTCATCTTGCAGGTACCACCATCCACCAGACATGAGTGCATCAAAAGCTACTGTGACCCTTAGTCCTGCAGGTCTACCTTTGCGCCCGGGGGCACCACCTTGCACACATTATGCGCAACGTGGAGTATGTAAGTTTGGACCTGCATGCAGATTTGATCATCCTGTAGCACCACTGAGTTATAGTCCATCTGCTTCCTCCCTGGCTGACATGCCGGTTGCTCCCTATCCCGTGGGTTCATCAATTGGTACACTTGCTCCATCATCTTCGTCATCGGAGTTGCAGCCTGACCTTACCCCAGGATCCAACAAGGAGGCTATTTCATCCAGGTTGTCTTTGCCAATGAGCACAACGACTGGATCAGTCGGCTTGACTTTGTCAACCGGTGGATCTGTTTCTCAATCTAGCAGTCAACCATCTTCTTAG 1407 0.5089 MERFARSTEGSHSDPSPEWTGPAAETGLEGSMWQLGLGGDGGGGGGEESYPLRPSEADCMYYLRTGVCGYGSRCRFNHPPDCVVVIEAARTGDFPERVGQPVCQYYMRTGSCKFGPSCKYHHPKEGGGTANPVSLNYYGYPLRPGEKECSYYVKTGQCKFGSTCKFHHPQPAGIQIPPLPPPVPQVSHLSMPVPSPLYPTVPPPSGHSPQQFGLLVARPPLLPGSYVQSPYGPVLLSPSMVPYSGWAPYQATATSPVLPSSTPSNVGSAQFYGITQLPSSAGAYAGPYQPSDSLIGPSSSSQKEHSLPERPDQPECQYYMRTGECKFGSSCRYHHPPDMSASKATVTLSPAGLPLRPGAPPCTHYAQRGVCKFGPACRFDHPVAPLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELQPDLTPGSNKEAISSRLSLPMSTTTGSVGLTLSTGGSVSQSSSQPSS* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0356 468 ProSiteProfiles Zinc finger C3H1-type profile. 97 125 IPR000571 GO:0046872
Lan4g0356 468 SUPERFAMILY CCCH zinc finger 100 125 IPR036855 GO:0046872
Lan4g0356 468 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 468 - -
Lan4g0356 468 SUPERFAMILY CCCH zinc finger 56 80 IPR036855 GO:0046872
Lan4g0356 468 SUPERFAMILY CCCH zinc finger 145 171 IPR036855 GO:0046872
Lan4g0356 468 Gene3D - 128 176 - -
Lan4g0356 468 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Lan4g0356 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 312 337 IPR000571 GO:0046872
Lan4g0356 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 145 170 IPR000571 GO:0046872
Lan4g0356 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 56 80 IPR000571 GO:0046872
Lan4g0356 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 359 382 IPR000571 GO:0046872
Lan4g0356 468 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 124 IPR000571 GO:0046872
Lan4g0356 468 Gene3D - 299 385 - -
Lan4g0356 468 ProSiteProfiles Zinc finger C3H1-type profile. 356 384 IPR000571 GO:0046872
Lan4g0356 468 MobiDBLite consensus disorder prediction 411 468 - -
Lan4g0356 468 MobiDBLite consensus disorder prediction 283 314 - -
Lan4g0356 468 Gene3D - 53 127 - -
Lan4g0356 468 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Lan4g0356 468 SMART c3hfinal6 356 383 IPR000571 GO:0046872
Lan4g0356 468 SMART c3hfinal6 53 80 IPR000571 GO:0046872
Lan4g0356 468 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Lan4g0356 468 SMART c3hfinal6 97 124 IPR000571 GO:0046872
Lan4g0356 468 SMART c3hfinal6 310 337 IPR000571 GO:0046872
Lan4g0356 468 PANTHER PROTEIN PHOSPHATASE RELATED 1 468 - -
Lan4g0356 468 SUPERFAMILY CCCH zinc finger 313 338 IPR036855 GO:0046872
Lan4g0356 468 ProSiteProfiles Zinc finger C3H1-type profile. 310 338 IPR000571 GO:0046872
Lan4g0356 468 MobiDBLite consensus disorder prediction 1 27 - -
Lan4g0356 468 SUPERFAMILY CCCH zinc finger 360 384 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0356 Lan-Chr4 5820861 5831216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0356 1 466 C2H2 Transcription Factor Family AT5G18550 55.556 6.25e-152 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan4g0356 zf-CCCH 5.8e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0356 - - gmx:100778426 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0356 4 5820861 5831216 Lan16g0467 16 4585833 4594863 LSH
Lan12g1289 12 18673748 18680970 Lan4g0356 4 5820861 5831216 PCT
Lan1g1008 1 20489331 20493052 Lan4g0356 4 5820861 5831216 PCT
Lan1g0046 1 249700 253773 Lan4g0356 4 5820861 5831216 PCT
Lan4g0356 4 5820861 5831216 Lan12g1289 12 18673748 18680970 PCT
Lan4g0356 4 5820861 5831216 Lan1g1008 1 20489331 20493052 PCT
Lan4g0356 4 5820861 5831216 Lan1g0046 1 249700 253773 PCT