Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0345 ATGGAGGAGGATGATGAGATTCAAGCTCAACAAGCATGTAAGTATCCAAGAATTGGAAGCAAAAGAAATGAGTCTAGCAAATTAGGTGGTGGTGATGGTGGAAGCAAAAACTGTTTCCACAGTGGCAGCAATTGGAACAATGCTTCAAGAATTGTGAGGGTATCTAGAGCCTCTGGTGGAAAAGATAGGCACAGCAAGGTTATGACTTCAAAGGGGTTAAGAGACAGAAGGGTTAGGCTTTCTGTTACCACAGCCATTCAATTCTATGACCTTCAAGATAGACTTGGTTATGAACAACCTAGCAAAGCAGTTGAATGGTTAATCAATGCTGCTTCAGATGCAATTTCAGAACTCCCTCCTCTCAACACCACTTTCCCTGATACCCCAAATCAACAAAGTGATGAGAAAAGACCATGTTTTGATGAGGTAGATGGAGACACAAACAACTATCAAAACCAATGCCAAAGCCAGAACCTTTCTTTGTCCAAATCTGCTTGTAGCAGCACTTCAGAGACAAGCAAAGGTTCTGGCTTATCCTTATCAAGGTCTGAGATTCAGGTTAAAGCAAAGGAAAAAGCAGCAAAGGATAAAGAAAAAGAAAATGAGTCATCTCAAATTGCACATCATCATCATCATCATCATCACAATGTGACACAAACTGCTTCTTTCACTGAGCTTCTCACTGGAGGATTTGGTAATGTTGCTACCACTGCAACAAGTCCTAATGGTGCAGCAGGTGATGAGACTAATCTATTCAACAAGGCAAAGCAATGGTCACATATGGCTATGGATTACTTCAACTCAGGCCTTATGGTGGGTCCATCATCATCTTCAAGAAATGTTTCACCATTTAGTGCTGAAAACCAATCAGAACAGCTTCAGCATTTCCCTTTCATCACTGACCATAATTTCGTACCTTCTTCTCAGTCAAGTGGAAATGATTACAATCTCAACTTCACAATTTCTCCTTGCCTAGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCAACATCTCATATTATGCCTCATATGCAATTCTCTGGATCAACCAATCTACCTTTCTTCATAGGAGGAGAAGCTTCTCATTCAGCTTCTGCTGCTCCAACCATAGATGCTACTAACCATCACCAACAACAACAACTTCAGTTCTCACCTGTGTTTGATGGAAGATTGCAAATCTGCTATGGAGATGGAACCAGGCATCCAGACCAGAAAGGGAAAGCTAAAAACTGA 1236 0.4134 MEEDDEIQAQQACKYPRIGSKRNESSKLGGGDGGSKNCFHSGSNWNNASRIVRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYEQPSKAVEWLINAASDAISELPPLNTTFPDTPNQQSDEKRPCFDEVDGDTNNYQNQCQSQNLSLSKSACSSTSETSKGSGLSLSRSEIQVKAKEKAAKDKEKENESSQIAHHHHHHHHNVTQTASFTELLTGGFGNVATTATSPNGAAGDETNLFNKAKQWSHMAMDYFNSGLMVGPSSSSRNVSPFSAENQSEQLQHFPFITDHNFVPSSQSSGNDYNLNFTISPCLAGYNRGTLQSNSTSHIMPHMQFSGSTNLPFFIGGEASHSASAAPTIDATNHHQQQQLQFSPVFDGRLQICYGDGTRHPDQKGKAKN* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0345 411 MobiDBLite consensus disorder prediction 119 133 - -
Lan4g0345 411 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 4 411 IPR005333 GO:0003700
Lan4g0345 411 ProSiteProfiles TCP domain profile. 60 118 IPR017887 -
Lan4g0345 411 Coils Coil 180 200 - -
Lan4g0345 411 MobiDBLite consensus disorder prediction 185 207 - -
Lan4g0345 411 MobiDBLite consensus disorder prediction 1 42 - -
Lan4g0345 411 Pfam TCP family transcription factor 59 203 IPR017887 -
Lan4g0345 411 MobiDBLite consensus disorder prediction 145 183 - -
Lan4g0345 411 MobiDBLite consensus disorder prediction 119 220 - -
Lan4g0345 411 PANTHER TRANSCRIPTION FACTOR TCP24 4 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0345 Lan-Chr4 5587613 5596334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0345 43 411 TCP Transcription Factor Family AT4G18390 42.543 3.95e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lan4g0345 TCP 6.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0345 - - lang:109333568 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0345 4 5587613 5596334 Lan16g0496 16 5118598 5123013 LSH