Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0338 ATGAGTGATGGCACTGCTTCTTCGTATCTTCAGAGAATGGCCACAGAACTCAACTGTCCCATTTGTTGGAGTTTGCTTGATTCTGCAGTTTCACTTACCTGTAACCATGTATTCTGCAAATCGTGTATTCTGAAGTCGATGAAGTCGGCTTCTGATTGTCCTGTTTGTAAAGTACCTTTCACTCGTAGAGAGGTTCGCCCTGCTCCTCAAATGGACAACATGGTCAGCATATACAAGAGCATGGAGAATGCTTCAGGGATTAGTACGCCTGTCACTCAGAACATACCTATCACCAAACTATCAGATGGAGAAAAGCTACACAAAGGTGATGCTGATTGTGAAATGAAGAATGCCGGCGAAACTCTTAAGAATTCTGCACAAAAGAAAAAACTCATCAGGAAAAAGGAGTCGAAGAAAAAGATAATGTCAAGCACAAAAAGTATTGAAATTGCAAAACCATATTTTCCAGCAAAGAAAAGGATTCAAGTGCCACAGGACCCTCTTTCAGAAACTCCATTAATGGATTATAAGTTTGGAGACACTCTAAGTGATGTTAATAAAGAGGGAACAAAAGAGGGCTTGATCTTGGCAAATGAAAGGCCTCTCCAAAATGAAAAGGATGATCACGTTCTTAAACCTTTCTTTTGGTTAAGAGAAGAGGAAGATGGTGAAAAGATAAGTCAGGACTCTGATGGGGATCAACTCATTGATTGTGCAACACCAACTCCTCCTTCATTCAGTGATCTCAAGGACTCTGATGATGAAAGCCCTTTTAAAAAGGCTCCATCAGATGAGGCACAAAATAAAGCCTGTGTTAATTTATTTGATAGTGAGATGTTTGAGTGGACACAAAGGCCTTGCTCTCCTGAATTATTTTCAAGTCCTGTCAAAATGCAGGTTGAGGATACTTGTGAGATTGATGAAAATCAAGAGGATTTTGTTGCATTGGCACAAGAGCTGGAAAAAAATTGGCCAAGTGCTGATGCTGACAACTCAAAATTTGAGAATACCAAAGAAGGAAATGGATTGGATAACAAGTTACCACAAACTGTGGCTTCTCAAATTATAAGTTCTGATGATCAAAATGGGATAAAAGAGTCTGCAAAGAGAGGTAGGAAGGCTAGGGGAAAAGCAAGGCAAGGGAAGACTGGGGAACAAAGAGATCCAGTTAATGGAATGGATGCTAGTTCCAATATATCATCAAAAGTCAACCTGGAGAAAGCATTGGACCATAAGCATGATTGTTCTAAGTTGGGGAAGAATAATAGAACGGCCAAGAGGGTTTCATTCAGTACCCTTACAAATCAAACTGCTTGTACAGTCTCGAATATATTAGTTCCGAGTCGTGAAGTGGAGATGGTAAATAATTCACCATGTAACGAAGAAATTGAGAAGAATGGTCCTCATGATATCGGTGAGAAAATCAAGAGGAAAAGATCTGGAAAACGGAAGTCGAATAATGTGCAGGATCTACCTGAAGAATTATCTCCAGTGCAAAACAAGACCAATGAGTTTGCTGATTATGTATCATCAGTTTTGATTCCTGAGATGGATGATAAGGGAAAGGCCTCCAATAACAGGCAAAACAAAAGCAACTCTACTAGCAATTTTATGTCTTGCAATAGAGAATTGAGGAGTACCAAAAAGTTGAAACTTTCCTCTGATGGTATCATTGTGACTACAAATGTTACAGAAATACAACCTAATGCAAGTCATCAACAAATTCCTCATGCTAAGGCTTTGAATGATACATCAAAAGAGATGCAATGTCCATTGATGAATCAACCAGTTTTGCAGAAATGTGAGAGTCATGTCAAAAGGTGTCAGTGTGTTTTCTGTTTCTCATCAGAAGAAACAGAGGTTTCTGGACCGATGGTACATTACTATGATGGGAAGCCTGTAACTGCAGATTATGAAGGTGGATACAAAGTCACGCATTCTCACAGGAATTGCACGGAATGGGCGCCCAATGTATATTTCGTAGATGATAATGCAATAAATCTTGAAGCTGAAATAAGCAGAAGTCGGAGAATTAAATGTTGTTTTTGTGGACTTAAGGGGGCTGCACTCGGTTGTTATGAGAAGAGTTGTCGGAAGAGCTTTCATGTTCCTTGTGCCAAGTTAACTTCTCTATGTCGATGGGATATGGAAAATTTTGTCATGTTATGCCCTCTGCATGCTTCTTCCAAGTTGCCCAGTGAAAGTTCAGGATCCCAAGAAAGGAGTAACAAAAGTACAGCTAGAGAGAGGAAAACCCTTGCTCGCAAACATGACAATACAGGCCAAAGTCAGACTGCTCATGGATCATACAATAAATTAGTACTTTGTTGTTCTGCTCTATCAGTGCAGGAGATGAGTGTTGTTTCTGAATTTGAAAGAGCATCCGGGGTTAGAGTTTCAAAAAAATGGGATTCAAGTGTCACCCATGTAATAGCATCTGCAGATGAAAATGGAGCATGCAAAAGGACCCTCAAAGTATTGTTGAGTATTCTGGAGGGAAAGTGGGTTCTCAATATTGAGTGGATCAAAGCTTGCTTGAAGGAAATGGGACATGTTGACGAGGAGCGTTATGAACTTAATGTGGACATCCATGGAATCAGGGGTGGTCCTCGTCTTGGACGACTAAGAGTATTGAACAAGCGACCAAAACTATTTTATGGCTACAACTTCTATTTTATGGGAGATTTTGAAAAGTCATACAAGGGCTATCTACAAGATCTCGTAATTGCTGCTGAAGGGACAATTCTGCATAGAAAACCAGTGTCCCGTTACCAAAAAGCAATATCACCTGATATGCATCCAAACCAAACCCTCATCATTTACAGCCTTGAGTTTCCTGATAATTGCCATCCTTTGAGAAGGGATACAATTCTAAAGCAAAGGCGATGTGATTCAGAGGCCCTGGCAAGTTCTACAGGTTCAAAGGTTGCAAGCAATACATGGATTCTGAATTCTATTGCAGCCTGCAAGCTCCAAAGCCTTGCTCCATAA 2991 0.4019 MSDGTASSYLQRMATELNCPICWSLLDSAVSLTCNHVFCKSCILKSMKSASDCPVCKVPFTRREVRPAPQMDNMVSIYKSMENASGISTPVTQNIPITKLSDGEKLHKGDADCEMKNAGETLKNSAQKKKLIRKKESKKKIMSSTKSIEIAKPYFPAKKRIQVPQDPLSETPLMDYKFGDTLSDVNKEGTKEGLILANERPLQNEKDDHVLKPFFWLREEEDGEKISQDSDGDQLIDCATPTPPSFSDLKDSDDESPFKKAPSDEAQNKACVNLFDSEMFEWTQRPCSPELFSSPVKMQVEDTCEIDENQEDFVALAQELEKNWPSADADNSKFENTKEGNGLDNKLPQTVASQIISSDDQNGIKESAKRGRKARGKARQGKTGEQRDPVNGMDASSNISSKVNLEKALDHKHDCSKLGKNNRTAKRVSFSTLTNQTACTVSNILVPSREVEMVNNSPCNEEIEKNGPHDIGEKIKRKRSGKRKSNNVQDLPEELSPVQNKTNEFADYVSSVLIPEMDDKGKASNNRQNKSNSTSNFMSCNRELRSTKKLKLSSDGIIVTTNVTEIQPNASHQQIPHAKALNDTSKEMQCPLMNQPVLQKCESHVKRCQCVFCFSSEETEVSGPMVHYYDGKPVTADYEGGYKVTHSHRNCTEWAPNVYFVDDNAINLEAEISRSRRIKCCFCGLKGAALGCYEKSCRKSFHVPCAKLTSLCRWDMENFVMLCPLHASSKLPSESSGSQERSNKSTARERKTLARKHDNTGQSQTAHGSYNKLVLCCSALSVQEMSVVSEFERASGVRVSKKWDSSVTHVIASADENGACKRTLKVLLSILEGKWVLNIEWIKACLKEMGHVDEERYELNVDIHGIRGGPRLGRLRVLNKRPKLFYGYNFYFMGDFEKSYKGYLQDLVIAAEGTILHRKPVSRYQKAISPDMHPNQTLIIYSLEFPDNCHPLRRDTILKQRRCDSEALASSTGSKVASNTWILNSIAACKLQSLAP* 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0338 996 Pfam PHD-like zinc-binding domain 648 726 - -
Lan4g0338 996 Gene3D BRCT domain 770 875 IPR036420 -
Lan4g0338 996 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN 8 994 - -
Lan4g0338 996 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 88 IPR013083 -
Lan4g0338 996 SMART PHD_3 679 727 IPR001965 -
Lan4g0338 996 ProSiteProfiles Zinc finger RING-type profile. 19 57 IPR001841 -
Lan4g0338 996 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 8 994 IPR031099 GO:0006281|GO:0006974
Lan4g0338 996 SMART ring_2 19 56 IPR001841 -
Lan4g0338 996 SUPERFAMILY RING/U-box 6 80 - -
Lan4g0338 996 MobiDBLite consensus disorder prediction 518 540 - -
Lan4g0338 996 Gene3D BRCT domain 881 989 IPR036420 -
Lan4g0338 996 SUPERFAMILY BRCT domain 773 864 IPR036420 -
Lan4g0338 996 MobiDBLite consensus disorder prediction 248 262 - -
Lan4g0338 996 MobiDBLite consensus disorder prediction 459 502 - -
Lan4g0338 996 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 604 729 IPR013083 -
Lan4g0338 996 ProSitePatterns Zinc finger RING-type signature. 34 43 IPR017907 -
Lan4g0338 996 CDD BRCT_Bard1_rpt1 773 848 - -
Lan4g0338 996 Pfam Zinc finger, C3HC4 type (RING finger) 18 56 - -
Lan4g0338 996 MobiDBLite consensus disorder prediction 326 340 - -
Lan4g0338 996 ProSiteProfiles Extended PHD (ePHD) domain profile. 607 727 IPR034732 -
Lan4g0338 996 MobiDBLite consensus disorder prediction 359 396 - -
Lan4g0338 996 MobiDBLite consensus disorder prediction 729 766 - -
Lan4g0338 996 Pfam BRCA1 C Terminus (BRCT) domain 795 846 IPR001357 -
Lan4g0338 996 MobiDBLite consensus disorder prediction 325 345 - -
Lan4g0338 996 MobiDBLite consensus disorder prediction 526 540 - -
Lan4g0338 996 MobiDBLite consensus disorder prediction 222 265 - -
Lan4g0338 996 MobiDBLite consensus disorder prediction 743 757 - -
Lan4g0338 996 ProSiteProfiles BRCT domain profile. 784 859 IPR001357 -
Lan4g0338 996 SMART BRCT_7 882 989 IPR001357 -
Lan4g0338 996 SMART BRCT_7 767 849 IPR001357 -
Lan4g0338 996 SUPERFAMILY BRCT domain 884 994 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0338 Lan-Chr4 5516793 5522888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0338 3 69 RAD5 or RAD16-like Gene Family AT5G22750 32.000 5.41e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0338 K10683 - gmx:100804958 1192.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0338 4 5516793 5522888 Lan16g0501 16 5178567 5184837 LSH