LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan4g0326	ATGGATTTCACAAATCAATCTATGTCAGATTCTCCACAGAGAAAGATGGGTAGGGGGAAGATTGAGATCAAGAGGATTGAGAACACAACAAATCGCCAAGTAACCTTTTGCAAAAGAAGAAATGGTCTTCTCAAAAAGGCTTATGAGTTATCTGTTCTGTGTGATGCTGAGGTTGCTCTTATAGTTTTCTCTAGCCGTGGACGCCTCTATGAATATGCTAATAACAGTGTCAAATCAACTATTGAGAGGTACAAGAAAGCATGTTCAGATTCATCTGGTGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTATCAGCAAGAAGCAGACAAACTTCGTGTGCAAATTAGTAACCTGCAAAATAACAACAGGCAATTGATGGGTGAGTCTTTGGGCTCTATGAATGCTAAGGATCTCAAAAATCTTGAGACTAAATTAGAGAAAGGAATTAGCAGGATCCGTTCCAAAAAGAATGAGCTACTATTTGCTGAAATTGAGTACATGCAGAAAAGGGAGATTGACTTGCACAATAACAACCAGCTTCTTAGAGCAAAGATAGCTGAAAGTGAGAGGAACCAACATAACATGAATGTATTACCTGGAGGCACAAGCTATGAATCTATGCAGCAATCTCAGCAGCAGCAGCAGCAATTTGACTCTCGTGGCTACTTTCAAGTCACAGGATTACAACCTAATAATCACTATGCTCGCCAAGACCAGATGTCCCTTCAATTAGCTTGA	741	0.4022	MDFTNQSMSDSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTIERYKKACSDSSGAGSASEANAQFYQQEADKLRVQISNLQNNNRQLMGESLGSMNAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNQHNMNVLPGGTSYESMQQSQQQQQQFDSRGYFQVTGLQPNNHYARQDQMSLQLA*	247

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan4g0326	246	SUPERFAMILY	SRF-like	17	88	IPR036879	GO:0003677\|GO:0046983
	Lan4g0326	246	CDD	MADS_MEF2_like	17	86	IPR033896	GO:0000977\|GO:0045944
	Lan4g0326	246	PRINTS	MADS domain signature	18	38	IPR002100	GO:0003677\|GO:0046983
	Lan4g0326	246	PRINTS	MADS domain signature	38	53	IPR002100	GO:0003677\|GO:0046983
	Lan4g0326	246	PRINTS	MADS domain signature	53	74	IPR002100	GO:0003677\|GO:0046983
	Lan4g0326	246	ProSiteProfiles	K-box domain profile.	102	192	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lan4g0326	246	Coils	Coil	102	129	-	-
	Lan4g0326	246	Pfam	K-box region	100	186	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lan4g0326	246	Coils	Coil	139	159	-	-
	Lan4g0326	246	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	25	72	IPR002100	GO:0003677\|GO:0046983
	Lan4g0326	246	SMART	madsneu2	16	75	IPR002100	GO:0003677\|GO:0046983
	Lan4g0326	246	MobiDBLite	consensus disorder prediction	200	219	-	-
	Lan4g0326	246	Gene3D	-	28	94	IPR036879	GO:0003677\|GO:0046983
	Lan4g0326	246	MobiDBLite	consensus disorder prediction	1	21	-	-
	Lan4g0326	246	ProSitePatterns	MADS-box domain signature.	18	72	IPR002100	GO:0003677\|GO:0046983
	Lan4g0326	246	ProSiteProfiles	MADS-box domain profile.	16	76	IPR002100	GO:0003677\|GO:0046983
	Lan4g0326	246	PANTHER	AGAMOUSB	10	240	-	-
	Lan4g0326	246	PANTHER	MADS BOX PROTEIN	10	240	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan4g0326	Lan-Chr4	5371786	5379408	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan4g0326	14	246	MADS-box Gene Family	AT3G58780	67.797	1.37e-111	319

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Lan4g0326		K-box	1.5e-27	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan4g0326	K09264		-	gmx:732595	420.624

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan4g0326	4	5371786	5379408	Lan16g0518	16	5447734	5455221	LSH