Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0314 ATGGCTAGAAGGAATACCAAAATTGCATACATAGTCAATGATGCAAAGAGGAATGCGACATATAAGAAAAGAAAAAATAGTTTGATAAAAAAGACTATGGAGATCAGCACCCTTTGTGGTGTTGATGCTTGTGCCATTATATATAGGAGCAATGAACTTCAGCCAGAGGTTTGGCCATCTCATTCTGGAGTTCAAAGCGTGCTCTACAAGTTCTTGACATTTCCTCCTCTCGAACAAAGCAGGAAGATGTTCAATCAACAAAGTTTTTTGAAGCAAAGAATTGTGAAAGCTCAAGACAAACTGAGGAAAAAGAAGATTCAAAATAGAAAGCAAATCATGTCCCTTCTCATGTTCAAATGCCTGAGTACTGGGTTTGTTGAAGGGAATATTAATTTGCAAATTGTGAAAGATCTCTTATCGGTGATTGATCAAAATTTGTATCAGATTGATCGGAAAATCGCTAGAGATCAACACCAAGAGGGGACAGCTTGA 492 0.374 MARRNTKIAYIVNDAKRNATYKKRKNSLIKKTMEISTLCGVDACAIIYRSNELQPEVWPSHSGVQSVLYKFLTFPPLEQSRKMFNQQSFLKQRIVKAQDKLRKKKIQNRKQIMSLLMFKCLSTGFVEGNINLQIVKDLLSVIDQNLYQIDRKIARDQHQEGTA* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0314 163 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Lan4g0314 163 PANTHER MADS BOX PROTEIN 3 157 - -
Lan4g0314 163 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan4g0314 163 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan4g0314 163 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan4g0314 163 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 157 - -
Lan4g0314 163 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan4g0314 163 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lan4g0314 163 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
Lan4g0314 163 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Lan4g0314 163 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0314 Lan-Chr4 5222974 5223465 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0314 1 153 Type I MADS-box Gene Family AT5G48670 47.059 2.85e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan4g0314 SRF-TF 2.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0314 - - lang:109344569 266.159