Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0313 ATGGCTAGAAGGAATTCGAAACTTGCATACATAGTCAATGATGCAAAGAGGAATGCGACATATAAGAAAAGGAAAAATAGTCTGATAAAGATGACTAAGGAGATCAGCACCCTTTGTGGCGTTGACGCTTGTGCCATTATATATAACCGCAATGAATTTCAGCCAGAGGTTTGGCCATCTCATTCTGGAGTCCAAAGCGTGCTCTACAAGTTCTTGACATTTCCTCCTCACGAACAAAGCAGAAAGATGTTCGATCAACAAAGTTTTTTGAAGCAAAGAATCGTGAAAGCTCAAGACCAACTGAAGAAAAAGAAGATTTGCAATCGAAAGGAAATGATGTCCCTTCTCATGTTCAAATGCCTGAGTACTGGGTTTGTTGAAGAGGACATTGATTTGCAAATTGCAAAGGATCTCTTATCGGTGATTGATCGAAATTTGAATGAGCTTGATCGGAAAATCACTACAGTTCAACCCGAAGTGGGGACATTTTTTGCTACAAATAGAGCTTGA 510 0.3961 MARRNSKLAYIVNDAKRNATYKKRKNSLIKMTKEISTLCGVDACAIIYNRNEFQPEVWPSHSGVQSVLYKFLTFPPHEQSRKMFDQQSFLKQRIVKAQDQLKKKKICNRKEMMSLLMFKCLSTGFVEEDIDLQIAKDLLSVIDRNLNELDRKITTVQPEVGTFFATNRA* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0313 169 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Lan4g0313 169 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Lan4g0313 169 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan4g0313 169 Coils Coil 132 152 - -
Lan4g0313 169 PANTHER MADS BOX PROTEIN 4 157 - -
Lan4g0313 169 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lan4g0313 169 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lan4g0313 169 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 4 157 - -
Lan4g0313 169 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0313 Lan-Chr4 5211425 5211934 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0313 1 153 Type I MADS-box Gene Family AT5G48670 45.752 1.62e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan4g0313 SRF-TF 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0313 - - lang:109344569 338.191