Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0312 ATGGCTAGAAGGAATACGAAACTTGCATACATAGCCAATGATGCAAAGAGGAATGCGACATATAAGAAAAGGAAAAATAGTCTGATAAAGAAGACTAAGGAGATTAGCACCCTTTGTGGTGTTGAAACTTGTGCAATAATATATAGCAGCAATGGACTTCAGCCAGAGGTTTGGCCATCTCATTTTGAGGTCCAAAAAGTGCTCTACAAGTTCCTGACAATGCCTCCTCTGGAACAAAGCAGAAAGATGTTTGATCAAGAAATGTTTTTGAAGCAAAGAATCATGAAAGCTCAAGAGCAACTGAAGAAAAAGAAGATTCAGAATCGAAAGGAAATGATGTCCCTTCTCATGATCAAATGCCTAAGTACTGGGAAGGTCGAAGAGAATGTTAATGCACAAAATGCTAATGATCTCTTATGGGTGATTGATGAAAATTTGAAGGAGCTTGATGAGAAAATCACTAGAAATCAACCGCAAGAGGGGACACCAACGAATGTTAATGTCCAAGGAATGATTCAGACGAACGTCAATAATGGTCGGAATGAAATGGTTCCATTTGAAAACTTTAATATCTCAAATGGCTTTTGGCATGGTCCTTCTATTCATTGA 609 0.381 MARRNTKLAYIANDAKRNATYKKRKNSLIKKTKEISTLCGVETCAIIYSSNGLQPEVWPSHFEVQKVLYKFLTMPPLEQSRKMFDQEMFLKQRIMKAQEQLKKKKIQNRKEMMSLLMIKCLSTGKVEENVNAQNANDLLWVIDENLKELDEKITRNQPQEGTPTNVNVQGMIQTNVNNGRNEMVPFENFNISNGFWHGPSIH* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0312 202 Coils Coil 87 107 - -
Lan4g0312 202 Gene3D - 13 116 IPR036879 GO:0003677|GO:0046983
Lan4g0312 202 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Lan4g0312 202 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 173 - -
Lan4g0312 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan4g0312 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan4g0312 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan4g0312 202 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Lan4g0312 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Lan4g0312 202 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lan4g0312 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 173 - -
Lan4g0312 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0312 Lan-Chr4 5195281 5195930 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0312 1 153 Type I MADS-box Gene Family AT5G48670 47.059 3.74e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan4g0312 SRF-TF 2.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0312 - - lang:109344568 410.994