Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0311 ATGGCTAGAAAGAAGGTGAAAATTGCATACATTGCCAATGATGCACAGAGGAAAGCTACCTATAAGACAAGAAAAAATGGTCTGATAAAAAAGACTAAGGAGATCAGCACCCTTTGTGGCGTTGAAGCCTGTGCTATAATATATTATCCCAATCAATCTCTGCCAGAGGTTTGGCCATCTCATTCTGATGTCCAAAGAATTCTATACAAGTTCATGGCAACGCCTCCGCTTGAACAAAGCAAAAAGATGTTTAACCAAGAAATTTTTTTGATGCAAAGAATCACGAAGGCTCGGGAGCAGCTGAAGAAAAAGAAGAGTGAGAATCGGAAGGAAGAGATGTCCCTTCTCATGTTCAACTGCCTAAGTTATACTGGGAGCGTTGCTGAGAATGTTAATGTGAAAAATGCAAATGATCTTTTATGGGTTATTGATCAAAATTTGAAGGAGGTTGATCAAAAAATCACTAGAGATCAATCCCAAGAAGAGACACTAGTGGCTTCAAATAGTGCATATGGTTTGAACGGGGAGATGGATCCTATAGATCGTAATGTCCAAGAGATGATGCAGAATAACGCCAATAGTGGTGGGAATGAGATGGCTCCATTTGGATGCTTTAATATTTCTAATGGATTTTCGCATGGTCCTTTTTTCCATTGA 657 0.3927 MARKKVKIAYIANDAQRKATYKTRKNGLIKKTKEISTLCGVEACAIIYYPNQSLPEVWPSHSDVQRILYKFMATPPLEQSKKMFNQEIFLMQRITKAREQLKKKKSENRKEEMSLLMFNCLSYTGSVAENVNVKNANDLLWVIDQNLKEVDQKITRDQSQEETLVASNSAYGLNGEMDPIDRNVQEMMQNNANSGGNEMAPFGCFNISNGFSHGPFFH* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0311 218 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 192 - -
Lan4g0311 218 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Lan4g0311 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan4g0311 218 Coils Coil 91 114 - -
Lan4g0311 218 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Lan4g0311 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Lan4g0311 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan4g0311 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan4g0311 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan4g0311 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 192 - -
Lan4g0311 218 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Lan4g0311 218 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0311 Lan-Chr4 5175290 5176035 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0311 1 154 Type I MADS-box Gene Family AT5G48670 51.613 1.50e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan4g0311 SRF-TF 3.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0311 - - lang:109344568 281.952