Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0310 ATGGCTTCAGGGGCTATATTCTCGTCTTTGCGGCGGAGAAGGTCGCCGACGTTGGAAGCGTTTCTTGCACCGGTTGACTTTACGGACGTTGCTCTTGTTCAAACCCTAGTTTCTGTGGTTAATGAACTGGTATCTTGCTTCTCAAATCACATGTTCTATTTCCAACGCAAGAATTCGCGGTCTTTGATCCGAAAAGTTGAGGTTTTTCAGTTGCTTTTGGAGTATCTGAGTGATTCTAGTGTTTTTCTTCCACCTACCGCGGTTCTTTGTCTCAAGGAACTTTATATTATGCTCTATCGGTCAAAGATTCTTCTTGATTATTGCGCGCAATCGAGTAAGTTGTGGCTTTTGCTCCAGAACCATTCAATTTCTGGCCATTTCCATGATTTGAACCAAGAAATTTCAACCCTTTTGGATGTTTTTCCTATTAAGGATGTTGAATTGAGTAAGGATGTTAGGGAACAGTTTGAATTGTTGCAGAAGCAGTCAAGGAGGGCTAGGTTGCTTGTAGATATGAAAGACGAAGTTCTCAGAATTCGGTTCTTTTCGTTTCTTGATGAGTTTGAGTGTGGGAAGATTCCTGATTCAGCTGAATTAAAATGTTTTTGTGTTGAGAAATTGCAGATTTTGGATGCTAGGACTTGTAGGACTGAAATTGAGGCCTTAGAGGAGCAGATTGTTAATCATGAGGGAGACATTGAGCCTACGATTTCTGTGCTTAATGGGTTGGTGGCGATGACACGGTACTGCAGGTTTTTGCTTTTCAGATTTGATGAAGATGAACTTCATTTGGAGAATGGAAGTCAGAAGAAGATAAAAAAGAGATTGATTACCAAGGAAATTGCTGAAACATTTTTAACTGTTCCAAAGGACTTTTGTTGCCCTATATCATTGGATTTGATGTGTGACCCAGTGATAATTTCCACAGGTCAAACATATGACAGGAGTTCTATTTCCAGGTGGATGGAAGAAGGGCATACAACTTGCCCAAAAACAGGGCAAATGCTTGGCCACACTCGCCTTGTTCCTAATCGTGCTCTAAGGAATTTGGTCGTGCAGTGGTGCATCGCACATGGGGTTCCCCTTGACCCACCAGAGCTCATGGATGCTATGGCTGAGACTTACGCATCAGCTTGTCCCACCAAAGCTGCCATTGAAGCCAACAAAGCCACAGCAACCCTTCTCATTCAACAGCTAGCTAATGGATCACAAGCCGGGCAGACTGTAGCTGCTCGGGAGATACGCTTTCTGGCAAAAACTGGAAAGCAAAACCGTGCTTTAATTGCAGAAGCAGGGGCGATTCCTTATCTTCGGAACTTGCTTTTGTCTCCTAATCATGTTGCTCAGGAGAATTCTGTGACAGCATTGCTCAACCTATCCATCTTTGACAAAAATAAAAGTCGGATCATGGACGAGGAAGGGTGTCTGCAGTCAATCGTTGATGTGTTGAGATTTGGACACACAACAGAGGCAAGGGAAAATGCTGCTGCGACATTGTTCAGCCTATCTGCGGTCCATGACTATAAAAAGAGAATTGCTGATAAGATGGGAGCAGTTGAAGCCCTGGCAGGGTTGTTGCAAGAGGGGACTACCAGAGGAAAGAAGGACGCTGTAACAGCTTTGTTTAATCTTTCTACCCACACCGAGAATTGTGTTAGAATGATAGAGGCTGGTGCGGTAACAGCTCTAGTTGGGGCTTTGGGGAATGAAGGAGTTGCTGAGGAAGCAGCAGGTGCCTTGGCGTTGATTGTTCGGCAACCTGTTGGGGCCACAGCAGTGGTGAAGGATGAAGCAGCAGTAGCTGGCTTGATGCGAATGATGCGTTGTGGAACGGCAAGAGGCAAAGAGAACGCAGTTGTGGCATTGCTGGAGTTGTGCCGGAGTGGAGGTGCAGTGGCAACTGAAAGGGTGGTTAAGGCACCAGCTTTGGCTGGATTACTTCAAACCCTTCTTTTTACCGGGACAAAGCGTGCAAGACGAAAAGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAAAATTCATCTCTACATTATGGTGGATTAGGTGTAGGCTATGCATTTGCTAGCAATTCAGCTCCACCTAGGGATACAAGCTTTACTGGTGATGTTTCAGTACCAATGTCCATTTCAGTTCATGTTTTATAG 2148 0.4474 MASGAIFSSLRRRRSPTLEAFLAPVDFTDVALVQTLVSVVNELVSCFSNHMFYFQRKNSRSLIRKVEVFQLLLEYLSDSSVFLPPTAVLCLKELYIMLYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPIKDVELSKDVREQFELLQKQSRRARLLVDMKDEVLRIRFFSFLDEFECGKIPDSAELKCFCVEKLQILDARTCRTEIEALEEQIVNHEGDIEPTISVLNGLVAMTRYCRFLLFRFDEDELHLENGSQKKIKKRLITKEIAETFLTVPKDFCCPISLDLMCDPVIISTGQTYDRSSISRWMEEGHTTCPKTGQMLGHTRLVPNRALRNLVVQWCIAHGVPLDPPELMDAMAETYASACPTKAAIEANKATATLLIQQLANGSQAGQTVAAREIRFLAKTGKQNRALIAEAGAIPYLRNLLLSPNHVAQENSVTALLNLSIFDKNKSRIMDEEGCLQSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKRIADKMGAVEALAGLLQEGTTRGKKDAVTALFNLSTHTENCVRMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGATAVVKDEAAVAGLMRMMRCGTARGKENAVVALLELCRSGGAVATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENSSLHYGGLGVGYAFASNSAPPRDTSFTGDVSVPMSISVHVL* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0310 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Lan4g0310 715 SMART arm_5 547 585 IPR000225 GO:0005515
Lan4g0310 715 SMART arm_5 506 546 IPR000225 GO:0005515
Lan4g0310 715 SMART arm_5 421 461 IPR000225 GO:0005515
Lan4g0310 715 SMART arm_5 463 504 IPR000225 GO:0005515
Lan4g0310 715 SMART arm_5 587 627 IPR000225 GO:0005515
Lan4g0310 715 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Lan4g0310 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 361 IPR013083 -
Lan4g0310 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Lan4g0310 715 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 12 696 - -
Lan4g0310 715 PANTHER U BOX DOMAIN-CONTAINING 12 696 - -
Lan4g0310 715 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Lan4g0310 715 SUPERFAMILY ARM repeat 393 669 IPR016024 -
Lan4g0310 715 Gene3D - 391 667 IPR011989 -
Lan4g0310 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Lan4g0310 715 Coils Coil 212 232 - -
Lan4g0310 715 CDD RING-Ubox_PUB 292 334 IPR045210 -
Lan4g0310 715 Pfam Armadillo/beta-catenin-like repeat 423 460 IPR000225 GO:0005515
Lan4g0310 715 Gene3D - 28 144 IPR036537 GO:0007166
Lan4g0310 715 SUPERFAMILY RING/U-box 277 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0310 Lan-Chr4 5162138 5164792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0310 1 714 U-box Gene Family AT1G29340 68.579 0.0 930
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0310 - - gmx:100811153 1181.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0533 12 12060361 12063130 Lan4g0310 4 5162138 5164792 PCT
Lan4g0310 4 5162138 5164792 Lan12g0533 12 12060361 12063130 PCT