Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0309 ATGACTAGGGCTGTTAGGCATAGGGTACTGAAGGATTGTAATGGTGATATTAGTGACCATCTAAGAAACCATATCCATTTAACAAATTGCATTCACTTGAAGAACCATATGCACAAGAACAGTCCCATACTGGCTGATAGGTCACTCATGAGAGACCTTGTTGTGCTTCAGAGATCGCGCTCTCTCCGGGACCCATCAGCTAGTCCTCCATCATGGCATTCACCCTCTGTAGTTGATGTGCTCTTCAAGAGAGCTGAGAGTGATGCCGTGGTTCAAGAGGGAAGAAGGTCTATTGGCGTTGAGCGCAGGAAAGGAGGGAGGAGATTGCCTGGAACCTCACCCCCGTTGACGAGTATAGGTACAACGAGGGTTGCTCAGGGTGAAGGTAATGTGGGTGATGATGGGGTTCCAGGAACTAGTGAACGTAGTAGCAAGAGTGGAGTAGGGAATGGGAGGAGAGTTGTGAGAGAAGAATCCGGTAGGAAGAATGATAGGCCTGATTATTTCGATGTTAGTCAAGAGCAGCAATTCAGTCAAGCTGGCAAAAGTTTGGCTGAAGATGTTATTTCAAGGCACTCTGAATCTAAAGAGAGAAAGAGCAAACAAAGAGTGAAGAATTTTCATGCAAAGACCCTTTCTGAGCAGCTGAATGATGTTCCACTGGAAAGTGATGATTTGGCATCAACAAACATGCATTTTCATGGAAGGTTTCCGAGACAGGAGAGAATTATCGAGCAGGCTGAAACCAGCAGGTGCAGTCATGGAAGTGGGTTGAATAGGGGTAAGAGGCGTAAATTTCGAAACACGAGAAGAACTCGAGTTGCTACTGGATCAAGAGATATTGGAGCTGAGAATGAATTGTCTGTGGCTTCCAACTCATTAGCTCAGGGTTCAGCTCACCAGAAATATGAGACAGAGGAGGCTGATAACTATGTCGATCAAAATGTTACTAGGGCTCCGAAGAATGGCTGTGGCATTCCTTGGAATTGGTCCAGAATTCATCATAGAGGCAAATCTTTCCTTGACCTAGCTGGAAGAAGTTTCACATCTTGTGGCTTATCTGACCCGAAGTTAAAGAAAGGGGTATTAACCGCAAACGGAAGAAATATTCCTGAGATGCCAGTGGCATCTGAGTACTCAAGCTCATCTACTAAATCTGATGGTGAGTCACTGCCTTTACTATTTGAGGGATCTAGATCTCATGGAAGCACTGAAAATGCTTGTAGGGACCATGACTATTTTGGGGAACTAGCTCTTTTTGGTAACAATTTATTCAAGCATGATATTGATTCCGACCTTGCTTCCGAAGCTAGATCCGGTGACCAGCATAATTTGAGAGGGAATCGTCATAGTAGACATCAAAGCTTAACACAAAAATATATGCCACGAACCTTCAGCGATATGGTTGGACAGAATTTAGTGGCACAAGCTCTTTCAAATGCAGTGATAAGAAGGAAAGTTGGATTGTTGTATGTGTTTTATGGTCCCCATGGCACAGGAAAAACATCATGTGCTCGCATATTTGCCCGAGCTTTGAATTGTAATTCTTCAGAACATCCAAAACCTTGTGGCTTTTGTGATTACTGTATTGCATATGACATGGGTAAGAGTAGAAATATAAGAGAAGTTGGTCCGGTCAGTAATTTTGACTTTGAGAGCGTCATTGATCTACTTAACAACATGGTTGTTTCCAAGCTTTACTCACAGTACAGAATATTTATTTTCGACGACTGTGATACTCTGTCGCCAGATTGTTGGAATGCTATATCCAAGGTCATTGATCGAGCACCTAGACGTCTGGTGTTTATCCTTGTCAGTTCTAGTCTTGATGTCTTGCCTCATATAATAACATCCAGGTGTCAAAAATTCTTTTTCCCAAAGCTGAAGGACGCAGATATTATATATACATTGCAGTGGATTGCAACCAAAGAAGGTCTAGAAATTGATAAGGATGCCTTGAAACTCATTGCTTCAAGATCCGATGGGTCATTAAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGGCAGAGAATCTCTGTTCCTCTTGTTCAAGAACTGGTAGGGCTTATCTCCGATGAGAAGTTGGTTGATCTGCTTGATTTAGCATTATCTGCAGACACTGTCAACACTGTGAAAAATTTGAGAGTGATCATGGAAACTGGCGTCGAGCCATTAGCTTTAATGCCACAACTTGCTACCATAATTACTGATATACTTGCTGGGACCTATGATTTCACGAAAGAAAGGCGAAGAAGGAAGTTCTTTAAGAGACAGCCATTGTCGAAAGAAGATATGGAAAAGCTTCGCCAAGCTCTGAAAACTTTATCCGAGGCTGAGAAGCAGTTGAGGATGTCCAATGACAAGCTAACATGGTTGACAGCTGCATTGCTTCAACTTGCTCCTGACCAGCAATATTTGTTGCCTACTTCATCTGATAATAGTTTCAACCATAGTCCCTTGGCTCTAAACAATGCACATGTGCAACAAGCATCCAGAATAACTGGTAATCCTGTTGAAATTCCTGGCAAAGCGAGACGATTGTCAATGGATGATAGAATAGAAAATTTCCATGCTGAAAGCTCAACTAATGGTGTGACAAGGGGTGTTAATTCGGAGAAAAGAAGACATAGCGTGTCTGGTGTCGCTCCTCAACATCTTTATTCTCGTACAACCAATAATAGTAGGATGAATGAAAGGCAGATTTTCGGTAAAAACCGTAAAGCAATTGAAGAGATATGGTTAGAGGTGCTTGAAAGGATTCAAATTACTGGTCTAAAAGAGTTCTTGTATAAAGAAGGCAAGCTGATCTTCGTTAGTTTTGGGGCAGCTCCAACTGTGCAGCTGATGTTTAGTTCTCAACTAACGAAATCTACTGCCGAGAAGTTCACAGGCCACATCTTACAAGCATTTGAGTCTGTCATTGGATCTTCAATAACGATAGAAATTAGATGTGAGACAAACAATTATGCATCCTCGGTTCAACAGCCGCTTAAATTGCCTGGTATTAACAATGGTTCGTCTCAGATTAGAGACTCAAATGGTGATGCCATTCAATATCATCCTTCACTAACTGATTCTGTTGATAAGAGAACGGGTGAAATTGTGGAAGAAGCAGCCTCTCCAGTGCAGCACCCGAATGATGAGCAGCAGATTGGTGCTCATGCAGCATCTCATAGAAGTCCAGGGAGTACAGGTATAGGACAAGCATCAGCTTCCCAAAAAGAGCCAATTGTTAAGTCACATTTAGACAGAAGAAAGCTTTGTGAACAAGGCCAAATTCGAAGTCTCGTAAGAAGTAAGCTATCTCTTGCTCATGTAATCCAGAAGGCAGAAGGTCAGCGAAATGGTTGGTCAAAACGCAAAGCAGTTTCTATTGCTGAAAAGCTTGAACAAGAGAATCTGAGACTGGAACCAAGATCAAGGAGCTTACTATGCTGGAAAGCGTCAAGAGCAACTCGTCGGAAGCTATCGCGCTTGAAAATTCGAACCCGAAAACCATGTGCATTGTTGAAACTTGTCTCATGTGGGAAATGTCTATCTACAAAATCTCCAAGGTAG 3567 0.4242 MTRAVRHRVLKDCNGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSLMRDLVVLQRSRSLRDPSASPPSWHSPSVVDVLFKRAESDAVVQEGRRSIGVERRKGGRRLPGTSPPLTSIGTTRVAQGEGNVGDDGVPGTSERSSKSGVGNGRRVVREESGRKNDRPDYFDVSQEQQFSQAGKSLAEDVISRHSESKERKSKQRVKNFHAKTLSEQLNDVPLESDDLASTNMHFHGRFPRQERIIEQAETSRCSHGSGLNRGKRRKFRNTRRTRVATGSRDIGAENELSVASNSLAQGSAHQKYETEEADNYVDQNVTRAPKNGCGIPWNWSRIHHRGKSFLDLAGRSFTSCGLSDPKLKKGVLTANGRNIPEMPVASEYSSSSTKSDGESLPLLFEGSRSHGSTENACRDHDYFGELALFGNNLFKHDIDSDLASEARSGDQHNLRGNRHSRHQSLTQKYMPRTFSDMVGQNLVAQALSNAVIRRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCDYCIAYDMGKSRNIREVGPVSNFDFESVIDLLNNMVVSKLYSQYRIFIFDDCDTLSPDCWNAISKVIDRAPRRLVFILVSSSLDVLPHIITSRCQKFFFPKLKDADIIYTLQWIATKEGLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMPQLATIITDILAGTYDFTKERRRRKFFKRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYLLPTSSDNSFNHSPLALNNAHVQQASRITGNPVEIPGKARRLSMDDRIENFHAESSTNGVTRGVNSEKRRHSVSGVAPQHLYSRTTNNSRMNERQIFGKNRKAIEEIWLEVLERIQITGLKEFLYKEGKLIFVSFGAAPTVQLMFSSQLTKSTAEKFTGHILQAFESVIGSSITIEIRCETNNYASSVQQPLKLPGINNGSSQIRDSNGDAIQYHPSLTDSVDKRTGEIVEEAASPVQHPNDEQQIGAHAASHRSPGSTGIGQASASQKEPIVKSHLDRRKLCEQGQIRSLVRSKLSLAHVIQKAEGQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRATRRKLSRLKIRTRKPCALLKLVSCGKCLSTKSPR* 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0309 1188 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 178 1155 - -
Lan4g0309 1188 CDD AAA 469 628 - -
Lan4g0309 1188 Coils Coil 764 791 - -
Lan4g0309 1188 MobiDBLite consensus disorder prediction 151 169 - -
Lan4g0309 1188 Gene3D - 446 625 IPR027417 -
Lan4g0309 1188 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 675 IPR027417 -
Lan4g0309 1188 MobiDBLite consensus disorder prediction 93 204 - -
Lan4g0309 1188 MobiDBLite consensus disorder prediction 93 108 - -
Lan4g0309 1188 MobiDBLite consensus disorder prediction 187 201 - -
Lan4g0309 1188 PANTHER PROTEIN STICHEL-LIKE 3 178 1155 - -
Lan4g0309 1188 MobiDBLite consensus disorder prediction 1004 1026 - -
Lan4g0309 1188 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 454 802 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Lan4g0309 1188 MobiDBLite consensus disorder prediction 1064 1078 - -
Lan4g0309 1188 CDD HLD_clamp_pol_III_gamma_tau 628 691 IPR045085 -
Lan4g0309 1188 SUPERFAMILY post-AAA+ oligomerization domain-like 699 802 IPR008921 GO:0003677|GO:0006260
Lan4g0309 1188 MobiDBLite consensus disorder prediction 1004 1023 - -
Lan4g0309 1188 Pfam DNA polymerase III, delta subunit 471 628 - -
Lan4g0309 1188 SMART AAA_5 487 628 IPR003593 -
Lan4g0309 1188 MobiDBLite consensus disorder prediction 1041 1080 - -
Lan4g0309 1188 Gene3D - 629 691 - -
Lan4g0309 1188 MobiDBLite consensus disorder prediction 436 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0309 Lan-Chr4 5133210 5139124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0309 454 752 Core DNA Replication Machinery Family AT1G21690 24.671 4.03e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0309 - - gmx:100809005 1874.75