Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0300 ATGGATCAAGATAGAAGCAAAGGTATAGGTGTGGTGTTGGACCATGTTCATGAAGGGGTTGATGAGAATTTGAGTATTTTAGTTGAAGGGGTTGCAATTGATGCAGTAGATGGGGGTAGCTTGGGTGGAATAGCTTGTATAAGTGGAGAAGTTGGGACTTCAAATGAGACGGGTAGCGGCTCGGGTTTGAATAAAGAGCTAACAGAGGGTGCTGAGGAAGTTAAGGATCGTGATGAAGTAAAAATCAGTGATACTTCGACGGTGGTTGATCAAGGGGGAAGTAATAATTCAAACCATTTGGTAAATCAGGAAGTGCTTGAGACTGTTTCTGTAATAGAATTTATTCAGAATGAGTATGTAAATGGAGAGAATAGGAAATTGGAAGCAAAAGTTACTGAATCAGGGTTGAGCAAAGTACCCGTGAAAACACCGAAAGGGTCAAGTGATGTAAATTCGTGTGTGATTGACATAAACTGCGGCAGCCACAAAGGGTTAAGTGAGAGTTCAGATGGTGAAAAGATTTGTAGGATTTGCCATCTTGCTTCTGGGCGACCATCAGATGCAACATCCGTTGGCATTGCTAACGACGATAGTAATGCAGATTTGATTCAGCTTGGTTGTGCTTGTAAAGACGAGTTAGGCATTGCCCACATTCATTGTGCCGAGGCATGGTTCAGAATTAAAGGAAACAGAGTATGTGAAATATGTGGCGAGACTGCAAAAAACGTTGTGGGTTTTGCTGATCCTGGATTTATGGTAGAGTGGAACGAAAGAAGATTAATGGACAACGAAAGCAACTCATCGGGCAGGTTTGTTGGATGCTGGCGAGGACAACCATTTTGTAACTTCTTGATGGCATGCCTGGTTATAGCCTTTGTTCTGCCATGGTTTTTTCGTGTAAATATGTTCTAA 912 0.4211 MDQDRSKGIGVVLDHVHEGVDENLSILVEGVAIDAVDGGSLGGIACISGEVGTSNETGSGSGLNKELTEGAEEVKDRDEVKISDTSTVVDQGGSNNSNHLVNQEVLETVSVIEFIQNEYVNGENRKLEAKVTESGLSKVPVKTPKGSSDVNSCVIDINCGSHKGLSESSDGEKICRICHLASGRPSDATSVGIANDDSNADLIQLGCACKDELGIAHIHCAEAWFRIKGNRVCEICGETAKNVVGFADPGFMVEWNERRLMDNESNSSGRFVGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0300 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 246 IPR013083 -
Lan4g0300 303 MobiDBLite consensus disorder prediction 53 78 - -
Lan4g0300 303 Pfam RING-variant domain 175 236 IPR011016 GO:0008270
Lan4g0300 303 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 303 - -
Lan4g0300 303 SUPERFAMILY RING/U-box 171 239 - -
Lan4g0300 303 SMART ringv_2 174 237 IPR011016 GO:0008270
Lan4g0300 303 ProSiteProfiles Zinc finger RING-CH-type profile. 167 243 IPR011016 GO:0008270
Lan4g0300 303 PANTHER ZINC FINGER, RING-CH-TYPE 1 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0300 Lan-Chr4 5012651 5015274 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0300 145 302 C3H Transcription Factor Family AT5G05830 40.588 6.88e-31 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0300 - - gmx:100791720 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1753 1 31898213 31900842 Lan4g0300 4 5012651 5015274 PCT
Lan4g0300 4 5012651 5015274 Lan1g1753 1 31898213 31900842 PCT