Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0294 ATGGAGAACAAACAAAAAACAATTCTTATGCATAGGTATGAACTAGGCCGTTTGCTCGGTCAAGGCAATTTCGCCAAAGTTTACCATGCAAGGAACTTGAAGACAGGCCAAAGTGTTGCAATCAAGGTGTTTAACAAAGAAATGGTGACAAGGGTTGGCATGATGGAGCAAATCAAGCGTGAAATCTCGATTATGCGTCGTTTAAGGCATCCCAATGTTGTGCAGCTATATGAAGTAATGGCAAGCAAAACCAAGATATATTTTGTGATGGAATGTGTGAAAGGCGGGGAGCTTTTCGATAAAGTGTCCCGAGGGAAGTTAAAGGAAGATGTTGCCAGGAAATATTTCCAACAATTGATTGATGCTGTTGATTATTGTCACAGCAAAGGGGTGTTTCACCGTGACCTTAAACCGGAGAATGTTCTGTTGGATGAGAATGGCGACCTCAAGATATCAGATTTTGGTTTGAGTGCATTGTTGGAGTCTAGGAAGATCGATGGTCTTCTTCACACGACGTGTGGAACACCGGCTTATGTAGCTCCTGAGGTGATAAAGAAAAAAGGATATGATGGAGACAAGGCAGATATTTGGTCTTGTGGTGTAATTCTCTATGTTCTGTTGGCTGGATATCTTCCTTTCAATGATAGAAATCTGATGGAAATGTATCGGAAGATTGCGAAAGGAGATTTTAAGTGCCCACCATGGATTGCAGCCGATTCGAAAAAGCTTCTCCGAAGAATCCTTGATCCTAATCCAAAGACAAGAACTAGTATTACCAGAATCATGGATAATAGTTGGTTTAGAAAAGGGTATAAGCAGATTGAAGCATCAAAGTGTCCACCCCTATCAAATAGAGATGGTGAGGATTTTATTGATATTGAGGCTGCATCTGCTTCACCAAGTTCAGAAAGTAGCACAAATAGTGAAGAATATGCTATGAAGCCATATTATTTCAATGCATTTGATCTCATATCAATCTCTTCCGGATTTGATCTTTCTGGTCTATTTGAGAGAGATATGATAAGCCAAAGAGAGGAGGCTAGGTTTATTACTACAAAACCACCTTCAATGATTGTGTCAAAACTTGAAGAGATAGCATATAAAGATAGTATATTTAAGGTCATGAAGAGAAATGGAACTGTTAGATTGGAAGGAAAGAAGACGGGACGACAAAGCCAACTCATTATAGATGCCGAAATTTTCGAGGTTACATCTTTATTCCACATTGTTGAGGTGAAGAAAATTGCTGGAGATTCATTGGAATATTGGAAATTATGGGAACAGGACTTCAAGCCTTCTCTGAATGAAATAGTTTGGGCTTGGCAAGTATGTGAGTAA 1338 0.3939 MENKQKTILMHRYELGRLLGQGNFAKVYHARNLKTGQSVAIKVFNKEMVTRVGMMEQIKREISIMRRLRHPNVVQLYEVMASKTKIYFVMECVKGGELFDKVSRGKLKEDVARKYFQQLIDAVDYCHSKGVFHRDLKPENVLLDENGDLKISDFGLSALLESRKIDGLLHTTCGTPAYVAPEVIKKKGYDGDKADIWSCGVILYVLLAGYLPFNDRNLMEMYRKIAKGDFKCPPWIAADSKKLLRRILDPNPKTRTSITRIMDNSWFRKGYKQIEASKCPPLSNRDGEDFIDIEAASASPSSESSTNSEEYAMKPYYFNAFDLISISSGFDLSGLFERDMISQREEARFITTKPPSMIVSKLEEIAYKDSIFKVMKRNGTVRLEGKKTGRQSQLIIDAEIFEVTSLFHIVEVKKIAGDSLEYWKLWEQDFKPSLNEIVWAWQVCE* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0294 445 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 4 444 - -
Lan4g0294 445 CDD STKc_SnRK3 12 266 - -
Lan4g0294 445 Gene3D Kinase associated domain 1, KA1 321 440 - -
Lan4g0294 445 SMART serkin_6 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0294 445 ProSiteProfiles NAF domain profile. 313 337 IPR018451 GO:0007165
Lan4g0294 445 ProSiteProfiles Protein kinase domain profile. 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0294 445 Pfam NAF domain 316 376 IPR004041 GO:0007165
Lan4g0294 445 Pfam Protein kinase domain 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0294 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Lan4g0294 445 Gene3D Transferase(Phosphotransferase) domain 1 3 320 - -
Lan4g0294 445 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Lan4g0294 445 CDD CIPK_C 319 435 - -
Lan4g0294 445 PANTHER - 4 444 - -
Lan4g0294 445 SUPERFAMILY Protein kinase-like (PK-like) 9 285 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0294 Lan-Chr4 4961190 4963038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0294 3 442 CBL-interacting serine-threonine protein kinases AT5G45820 63.039 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lan4g0294 Pkinase 1.4e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0294 K07198 - gmx:100807927 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0294 4 4961190 4963038 Lan16g0536 16 6242135 6243950 LSH
Lan4g0294 4 4961190 4963038 Lan11g0359 11 2599873 2601440 PCT
Lan11g0359 11 2599873 2601440 Lan4g0294 4 4961190 4963038 PCT