Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0284 ATGGCTGGTTCTGTAGAAAATGGGCATGATACGAAGAAGAGGTATTTCCTTGTCAGTATCTCTTCAATCCTTCTTGTTGCTATGGTTGGTGTGGTGGCTGTTAGTTTAACCCAAAGTGAGAGCCCGGATAACGGTTCAACCGAGATCTCGAGCACTCAGAGGAATGCAGAGATGCTCTGCCAATCAACACAATACAAAGATACTTGCGTCAAAAGCCTCGATAATGCGTCAAACAAGACCGACGTGAAAGAGCTTGTGAAAGTGGCTTTCAATTCCACAGCTCAGGAGTTGTTAAGCCAATTGAAGAACTCTAAACTTTTTGAAGAGTTGGCTAAGGACAACATGACCAAGCAGGCCTTGGATATATGCAAGGAAGTGCTTGATTATGCAGTTGATGACATTCAGAAATCAATTAACTCATTGGATACTTTTGAACTCAACAAGTTAAGCCAACATGCCTATGACCTTAAGGTTTGGCTTGCAGGCACACTCTCACACCAACAAACATGTTTAGCTGGATTCGAAAACTCGAAAACAAAAGCGGGTTTGACAATGGCTAAGGCTCTTAACACTTCACTTGAGCTAAGTAGCAATGCAATTGATCTCATAAATGCTGCATCTGAACTCCTTAAGGGTCTCAACTTGGACACCTTTGATCTTGGTACAACTTCTAGCAGGAGGCTTCTCTCTGAGGAAGAACAACAACCACTTGTTGATGGTTTTCCTTCATGGGTGAGCGATGGACAACGGCGCCTTCTTCAGGCAGCACCGGGTGGTCGTGGTGGCATTAAGGCTGATGCAGTTGTGGCTCAAGATGGGAGTGGACAGTTCAAAACACTCACTGATGCTCTTACAACTGTTCCAAAGAAAAATGCTGTGCCTTTTGTGATTCATGTTAAGGAGGGTGTGTACAATGAATATGTTATTTTGACCAAACATATGACCAATGTCACAATCATAGGAGATGGTCCTACAAAAACCATATTCAGTGGTAGCAAAAATTACAAGGATGGTGTCCAAACTTACAACACTGCAACCTTTGGTGTTAATGCTGCTAACTTCATTGCCAAGGACATTGGTTTTGAGAACACAGCAGGATCAGAGAAGCATCAAGCTGTGGCACTCAGGGTAACAGCTGATCAAGCAGTATTCCACAACTGCAAAATGGACGGATTCCAAGACACTCTATATGTCCAATCTAAACGCCAATTCTACCGCGACTGCGCCATCTCAGGCACCATAGACTTCATCTTCGGCGATGGAATCGCAGTGTTCCAGAACTGCAAGCTTATAGTAAGAAAACCCTTACCAAACCAACAATGCATGGTTACAGCAGGTGGAAGATCCAAGCTTGAAAGCCCCAGTGGCCTAATTTTCCAAAGCTGCCACTTCACAAGTGAGCCAGAAGTAGCTACCTTGAAGCCCAAGATATCATACTTGGGAAGACCATGGAGGATTTACTCTAGGGTTGTCATCATGGATTCTACAATTGATGACATTTTTGTTCCTGAAGGGTACATGCCATGGATGGGAAGTGCATTCACAGAAACAAGTACCTATTATGAGTACAATAACAAAGGTGGTGGTGCTAACACTGCAGCAAGAGTTAAATGGCCTGGTGTTAAGACCATAACATCTGCTGAAGCTGCTGTTTTCTATCCAGGGAAGTTCTACGAAATCGCTAACTCGACTCAACGTGATTCTTGGATTACAAGCTCCGGCATACCGTATTCATTAGGCCCCATTCCAAACACCAATGCTGCAACCTAA 1770 0.4379 MAGSVENGHDTKKRYFLVSISSILLVAMVGVVAVSLTQSESPDNGSTEISSTQRNAEMLCQSTQYKDTCVKSLDNASNKTDVKELVKVAFNSTAQELLSQLKNSKLFEELAKDNMTKQALDICKEVLDYAVDDIQKSINSLDTFELNKLSQHAYDLKVWLAGTLSHQQTCLAGFENSKTKAGLTMAKALNTSLELSSNAIDLINAASELLKGLNLDTFDLGTTSSRRLLSEEEQQPLVDGFPSWVSDGQRRLLQAAPGGRGGIKADAVVAQDGSGQFKTLTDALTTVPKKNAVPFVIHVKEGVYNEYVILTKHMTNVTIIGDGPTKTIFSGSKNYKDGVQTYNTATFGVNAANFIAKDIGFENTAGSEKHQAVALRVTADQAVFHNCKMDGFQDTLYVQSKRQFYRDCAISGTIDFIFGDGIAVFQNCKLIVRKPLPNQQCMVTAGGRSKLESPSGLIFQSCHFTSEPEVATLKPKISYLGRPWRIYSRVVIMDSTIDDIFVPEGYMPWMGSAFTETSTYYEYNNKGGGANTAARVKWPGVKTITSAEAAVFYPGKFYEIANSTQRDSWITSSGIPYSLGPIPNTNAAT* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0284 589 Pfam Pectinesterase 266 557 IPR000070 GO:0030599|GO:0042545
Lan4g0284 589 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 206 IPR035513 -
Lan4g0284 589 ProSitePatterns Pectinesterase signature 1. 291 310 IPR018040 -
Lan4g0284 589 CDD PMEI-like_3 59 207 - -
Lan4g0284 589 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 205 IPR035513 -
Lan4g0284 589 TIGRFAM PME_inhib: pectinesterase inhibitor domain 20 204 IPR006501 GO:0004857
Lan4g0284 589 Gene3D - 261 580 IPR012334 -
Lan4g0284 589 Pfam Plant invertase/pectin methylesterase inhibitor 59 201 IPR006501 GO:0004857
Lan4g0284 589 SUPERFAMILY Pectin lyase-like 264 579 IPR011050 -
Lan4g0284 589 SMART PMEI_2 51 202 IPR006501 GO:0004857
Lan4g0284 589 PANTHER PECTINESTERASE 8 584 - -
Lan4g0284 589 PANTHER PECTINESTERASE 8 584 - -
Lan4g0284 589 ProSitePatterns Pectinesterase signature 2. 410 419 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0284 Lan-Chr4 4857773 4860302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0284 12 588 Carbohydrate Esterase AT3G05610 45.783 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0284 K01051 - gmx:100820068 796.964