Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0277 ATGACTAGAAAAAAGCTTGAGCTCACATACATAGCTAGTGACTCAAAGAGAAATGCAACATTAAAGAAAAGGAGAAATGGGTTATGGAAGAAGATAAATGAGATCACCACCCTTTGTGGAATAGAGGCTTGTGCGATAATATCAACCCCTGATGATCTTCAACCAGAAGTATGGCCATCCCATTTGGGAGTCCAAAAGGTTCTATACAAGTTTAGTAGAATCCCTGAAATGGAAAAAAGCAAAAAGATGTTCAATCAAGAAAATTTCTTGAGCCAAAGCATCATAAAAGCCAAAGAGCAACTAAGAAAATTGAGGAATGAGAACAGAAAGAAGGAGATGTCTCTTCTTATGTTTCAATGCCTGAGTAGTGATAACTCTTCTAACAATGTTAACATGACTAATTTGAGTGATTTGTCATGGTTGATTGATCTAACCCTGAAGGAGATTGACCAAAATATCACAAAGAACCAACCCCAACAAGATGCATTAGTGACTACAAATGGAGGAGAAGCCATGAAAGGAGAAAATACATCTTTGGATTCTCATGTTCAAGGGATGATGCAGATTACTATGGATGCCATGCAGAAGCAGAATCTGGCTATGGACTCTATCAATGGTAGTGGGAATTTGATGATTCCAACTATAGAATTTGGTCTCTCAAATGGGATGGTTTGGAATGAACATTATCTACATTAA 696 0.3721 MTRKKLELTYIASDSKRNATLKKRRNGLWKKINEITTLCGIEACAIISTPDDLQPEVWPSHLGVQKVLYKFSRIPEMEKSKKMFNQENFLSQSIIKAKEQLRKLRNENRKKEMSLLMFQCLSSDNSSNNVNMTNLSDLSWLIDLTLKEIDQNITKNQPQQDALVTTNGGEAMKGENTSLDSHVQGMMQITMDAMQKQNLAMDSINGSGNLMIPTIEFGLSNGMVWNEHYLH* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0277 231 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Lan4g0277 231 Gene3D - 14 118 IPR036879 GO:0003677|GO:0046983
Lan4g0277 231 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 197 - -
Lan4g0277 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan4g0277 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan4g0277 231 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Lan4g0277 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 197 - -
Lan4g0277 231 Coils Coil 87 114 - -
Lan4g0277 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Lan4g0277 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan4g0277 231 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0277 Lan-Chr4 4558952 4559668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0277 1 153 Type I MADS-box Gene Family AT5G48670 50.980 8.00e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan4g0277 SRF-TF 3.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0277 - - lang:109329409 276.559