Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0273 ATGTCTTCAAGTGTCGTGCATGCATTTTATGCATTTGTTCCTTTTTGCATGCACTCTCTCTCCTCTCTCTATCTCTGCTGTCTTTCTCTCTCTACAGAAACACCCTCTTTCAATCACATACACGCGCTCACGCTTTCTCTCTCTCTCTCTCTCTCTAAAATCAAGGTGTCTGTGTTGTTACAGAGATTTCAGCTGAGAGGGATAGCAGCCACATTGAATTTTGGATTGATGGGTTCGGACCCTTGCGTGAATGCTCCATGTGTGCACGATTGGAAGATGGGGTGGCCTCTACGATCTGGTGGATTCGCCCAACTATGCATCAAGTGCGGATTCATGGAGGAATGGAAGCGTGGCATCCTTGATCCACTATCTGCTTATGATATGTCAGTTTTCTGTAATAAATTCCATCGTCAAAAAACCGGGTGGGTGGAGTGTAAATTTTGCAACAAGCCTATCCACTGTGGATGCATAGTATCTAGATCTTTATTCGAGTACCTTGACTTCGATGGCATAGGTTGTGTTAGCTGTGTAGCTTTCCAACTTCGTACGACGAGGAATACTGAAAATCTTAATGGGTCTATTTCATCAACCAAAAATAATTCAAGTGATTGGCGTTCTGCTCATATCGATGAAACACTGTTTGTGGATAATAGTGATGAAGGAAAACTTATGCAGTTGTGCAGAATTGTTGAAGCTAGTGAATCCAGCCGTTGGAATAATGCTCGTAGAGATAGCATAATGTCATGCAGTGGACAAAACAACCAAGAAGTGAAGTGCTCATTGGAGGAAGTGGATACCGGATTTTCAAATATGATTAAACCATTGGTTCAATCACTAGCGTTTTCCAAATTAGAAAATAATAGATCAACATGGGAGATTAAAAACATACATGAATCAACTGCACAACCATCTTTGAATATGTATCTGGGAAATCCGTCAGGGAACAACACTATCCTGCCTTCTTCTGGAGAGATCCTAGAAGCAAGACTTGAGGGAAACGGATCTCCTCCCTTTCACCAAGGGCAAAGATCTCGCCCTATATGGCCCAAACCATTGAAGACTGGGATATCCATGAATCTGGAACCAGATAAAGGAACACTTTCTCATGCACGGATTGCCCGACCACCTGCTGATGGTAGGGGCAAGAGTCAGTTACTTCCTCGATACTGGCCCAGGATCACTGATCAAGAGTTGGAGCGATTGTCTGGAGATTTGAAGTCCACTGTAGTGCCTTTATTTGAGAAGGTGTTGAGTGCCAGTGATGCCGGTCGAATTGGTCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGGCTTATTTTCCTCCTATTTCGAATTCTGAAGGTCTTCCTTTGCGGGTCCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTCAGATTTTGGCCTAATAACAATAGTAGGATGTATGTATTGGAAGGTGTGACCCCTTGCATACAGGCCATGCAATTATGTGCTGGTGATACTGTAACATTTAGTCGGATAGATCCCGGGGGAAAGCTTGTTATGGGTTTCAGAAAGGCATCGAATTCTATAGATACACAGGATGCTTCTACGTCTGCCCATTCTAATGGCATTTCAACGAAGGGAACAACCAATTCTGGTGGAACCGAGAATCTGCCACCGGGTAGCAGTTTTGCTGATCTTCTCCAGATGATAAAAGGGAATGGGGAACCTCACTTAAATGGGCATCTGGAACATCTTCATTTGGGTGCTGGAGCTGCAGGTTTGCTTAAAGCAGAAAATTGCGAGAAAACAAACAATCATTCACCACAGCAACCAATTCCAGTTTCTGAGAAGAGGACTCGCAATATTGGGCCTAAAAGCAAGAGGTTTTGCATTGATAACGAAGATGCTATGGAGTTGAGACTTACATGGGAAGAAGCACAGGACTTGCTTCGGCCACCCCCAAGTGTCCAGCCAAGTATTGTCACAATTGAGGACCAAGTAATTGAAGAATATGAGGAACCTCCGGTTTTTGGAAAGAGAACTATATTCTGTGCCTGTTCATCTGGGGGGAAAGAACAATGGGCTCAATGTGATGATTGCTCTAAATGGCGAAGACTACCAATCGATGTTCTTCTTCCTCCTAAGTGGACATGTTTTGAAAACGTTTGGGATGCTAGCAGGTCTTCATGTTCCATGCCAGAGGAGAAGAGTTCACGGCAATTCGAAAATCTTCTGAAACCCAACAAAGATTTTAAGAAGCGAAAAACTCTAGAAAATGGCAAGTCAATCAAAGAGCATGAGCCTTGTGGATTAGATGCTCTTGCCAGTGCAGCAGTTTTAGGAGAAAATCTTATGGACCCTGCCGAGTCATCAGCTGGAGCCACCACAAAACATCCTAGACACCGTCCCGGCTGCTCTTGTATTGTGTGCATTCAGCCCCCTAGTGGAAAGGGGAGACATAAGCCAACCTGTACATGCAATGTGTGCATGACCGTAAAACGCCGGTTCAAAACCCTTATGCTACGAAAGAAGAAACGCCAATCGGAACGCGAAGCAGATGCTGCTGCTAAAAAAGATAACAATCACCAGAGAGATGAGTCAAATGCCAATGGAGCGTCAAAAGATGATACAAGCCATTTGGAGAAAGAGAGAGGACTTAAGCCCAGGGTGGGCGAGTCCAGCGCTGGACGAATAGACTTAAATTCTCATCCCAACCGCGAAGATGCACAAATGGATATAACAGGACTTAGCATGTCTATTAATCATCTTGAAATTACAAACCATCAAGCAAGGGAATATATGAATCCGAATGGCTTAAAAAACAGCGATGTGCAGGTTAGTCAACATTCTTCATTACTCACTCAATCTAATGGAGAAGGTTAG 2847 0.4391 MSSSVVHAFYAFVPFCMHSLSSLYLCCLSLSTETPSFNHIHALTLSLSLSLSKIKVSVLLQRFQLRGIAATLNFGLMGSDPCVNAPCVHDWKMGWPLRSGGFAQLCIKCGFMEEWKRGILDPLSAYDMSVFCNKFHRQKTGWVECKFCNKPIHCGCIVSRSLFEYLDFDGIGCVSCVAFQLRTTRNTENLNGSISSTKNNSSDWRSAHIDETLFVDNSDEGKLMQLCRIVEASESSRWNNARRDSIMSCSGQNNQEVKCSLEEVDTGFSNMIKPLVQSLAFSKLENNRSTWEIKNIHESTAQPSLNMYLGNPSGNNTILPSSGEILEARLEGNGSPPFHQGQRSRPIWPKPLKTGISMNLEPDKGTLSHARIARPPADGRGKSQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISNSEGLPLRVQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLCAGDTVTFSRIDPGGKLVMGFRKASNSIDTQDASTSAHSNGISTKGTTNSGGTENLPPGSSFADLLQMIKGNGEPHLNGHLEHLHLGAGAAGLLKAENCEKTNNHSPQQPIPVSEKRTRNIGPKSKRFCIDNEDAMELRLTWEEAQDLLRPPPSVQPSIVTIEDQVIEEYEEPPVFGKRTIFCACSSGGKEQWAQCDDCSKWRRLPIDVLLPPKWTCFENVWDASRSSCSMPEEKSSRQFENLLKPNKDFKKRKTLENGKSIKEHEPCGLDALASAAVLGENLMDPAESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADAAAKKDNNHQRDESNANGASKDDTSHLEKERGLKPRVGESSAGRIDLNSHPNREDAQMDITGLSMSINHLEITNHQAREYMNPNGLKNSDVQVSQHSSLLTQSNGEG* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0273 948 SMART B3_2 413 514 IPR003340 GO:0003677
Lan4g0273 948 ProSiteProfiles Zinc finger CW-type profile. 676 726 IPR011124 GO:0008270
Lan4g0273 948 SUPERFAMILY DNA-binding pseudobarrel domain 411 515 IPR015300 -
Lan4g0273 948 MobiDBLite consensus disorder prediction 922 948 - -
Lan4g0273 948 MobiDBLite consensus disorder prediction 832 878 - -
Lan4g0273 948 Gene3D - 679 734 - -
Lan4g0273 948 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 79 935 - -
Lan4g0273 948 ProSiteProfiles B3 DNA-binding domain profile. 413 514 IPR003340 GO:0003677
Lan4g0273 948 CDD B3_DNA 411 512 IPR003340 GO:0003677
Lan4g0273 948 Pfam B3 DNA binding domain 413 512 IPR003340 GO:0003677
Lan4g0273 948 Pfam CW-type Zinc Finger 681 724 IPR011124 GO:0008270
Lan4g0273 948 MobiDBLite consensus disorder prediction 517 546 - -
Lan4g0273 948 MobiDBLite consensus disorder prediction 517 551 - -
Lan4g0273 948 MobiDBLite consensus disorder prediction 828 895 - -
Lan4g0273 948 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 79 935 - -
Lan4g0273 948 Gene3D - 391 518 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0273 Lan-Chr4 4423388 4431074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0273 77 898 B3 DNA Binding Superfamily AT2G30470 48.135 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan4g0273 B3 4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0273 - - lang:109337935 1496.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0273 4 4423388 4431074 Lan16g0551 16 6496808 6504565 LSH
Lan4g0273 4 4423388 4431074 Lan11g0355 11 2558055 2564886 PCT
Lan4g0273 4 4423388 4431074 Lan9g1244 9 19719897 19726853 PCT
Lan11g0355 11 2558055 2564886 Lan4g0273 4 4423388 4431074 PCT
Lan9g1244 9 19719897 19726853 Lan4g0273 4 4423388 4431074 PCT