Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0256 ATGACTCTGAGGTTCTCTTCTCTTCCCACCATGGAGAGTATGTCTTCCGTTCTCAAGAAATATTTTGGGTTTGCAGATTATCGGCCTTATCAGAAAGATGTTATTCAGAAGATTATTGAGAAAAAGGATTGTTTGGTAGTCATGGCTACTGGTAGTGGAAAATCCTTGTGCTACCAGGTACCTCCTTTGGTTGTTAAGAAGACTGGAATAGTTGTCAGCCCTTTGATATCATTGATGCAAGACCAGGTAATGGCTTTGAAACAGCGGGGTGTCAGAGCTGAATATATTGGAAGCACTCAGATGGATAACACTATTCAGACCAGAGCTGAGCATGGTCAATTTGACATTCTGTTCATGACTCCTGAGAAGGCATGTACAATTTCTTCCAGTTTCTGGTCCAACTTGCTAAAGGAAGGAATTAGTCTTCTCGCTGTTGATGAAGCACATTGCATTTCAGAATGGGGGCATGATTTTAGGGTGGAATACAAGCAATTGGACAAGTTACGTGTTTTTCTGCCAGATGTTCCTTTTGTTGGTCTAACTGCGACTGCTACTGAAAAGGTTCGGTTTGACATCATCACTTCTCTGAAGATGAACAACCCTTATGTTTCAGTTGGTTCATTTGATCGCGCAAATCTTTTCTATGGTGTCAAACTATTTAACCGTGGACAATCTTTTGTTGATGAGCTTGTGCAAGATATTTCAAAACAACTTTCTAGTGGTGGTTCAACTATAATTTACTGCATAACAATCAAAGATGTAGAGCAGATATTCAAGTCACTAGCTGAAGCAGGTATTGAGGCCGGAATGTACCATGGCCAAATGAACAAAAAAGCTCGAGAAGAGTCTCACAGATTATTTGTTAGAGATGAATTGCAAATCATGGTGGCTACTATTGCTTTTGGCATGGGCATAGATAAGCCTAATGTAAGACAAGTAATTCACTACGGTTGCCCTAAGAGTATAGAGTCCTACTACCAAGAAAGTGGGCGATGTGGTAGAGATGGTATAGCTTCTGCTTGTTGGCTTTACTACACAAGAAGGGACTTTAACCTGGGCGAATTTTACTGTCAAGATTTAAAATCAGAAAGCCAAAAAAAAGCTGTTATGGAGTCACTGAGGGCTGCTGAACGATATTGTGTACTGACAACATGCAGACGAAAGTTTTTGCTTGGATACTTCGGGGAAAATTTCTCAGCTGATAGATGTGGAAACTGTGATAACTGCACAGTCTCAAAGAAGGAACGTGACATGTCAAGAGAAGCATTTCTTCTAATGGCTTGTATTCACTCATGCCATGGAAAATGGGGCCTTAACATGCCCATTGACATCCTGCGTGGGTCTCGAGCCAAGAAAATTGTCGAAGCTCAGTTTGACAAGCTTCCACTTCACGGACTAGGGAAAACATACCCATCAACTTGGTGGAGAGCACTTGGAAATCAACTTATTTCTCATGGTTATTTGAAGGAGACTGTTGTTGATTTTTACAGATTTATAAGTGTTGATGCAAAGGGAGAAACTTTTTTGGCCTCTTCTACACCAGATTACCAACCTCGCTTAGTTTTGTCATTGACTGCTGAAATGCTTGGAGAAGAGGAAAATGGAAGCACACAAGAAGAATTCAAAACTCTAGCCACTTCAGAATCAGAGGGTTTTTCCGAGGCTGAGAGACAGCTCTACCAAAGGCTTTTAGAAGAAAGATTAAAGCTTGCGAGAAGTGTTGGAACAGCTCCATATGCCATATGCGGTGATCAAACAATCCGGAAAATTACGTTGACAAGACCGTCTACAAAAGCAAGGCTAGCAAACATTGATGGTGTGAATCAGCACCTAGTAACAAAATATGGCGATCAATTTCTTCAAGTTATTCAGAAACTGTCACAAGAACTAAACCTATCGTCGGATAAGGAAGCAACTGTGCATACCAATGAAGTAAGGAAAGTATCTCTAGTAACCAACCAATCCAGGAAATTGCCACCAGCAAAGCTTGAAGCATGGAGAATGTGGCATGAAGATGGTCTTTCTATTCAGATGATTGCTAACTTTCCAGGTAGATCAGCTCCTATAAAAGAACAAACTGTTGCTGAATATCTTCTAGAAGCTGCCCAAGATGGATTACCTTTTGATTGGACTAGATACTCCGAGATGATAGGACTGACAAAAGAGATCATATTACAAATTCAGGGTGCTATTTCAAAGGTTGGATCTACAGAAAAGCTAAAGCCTATAAAAAATGAATTGCCAGAAGATATAAGTTATCAGCACATCAAGACTTATTTGACAATGTTAAATTGCGGAGTATCCTCAGAAGCCATTCAACCTGGAGACCACTATGCTGGGAAAGATGACGAACTTGTAAACAATGAAGCTTCCATTTCTTCCAAGAGTCTGATTGAAAAATGTGACTTAACAACAAATGACATACCTTCTGGAGCTGTCAATGGTGGTTACCAGCTACGGAAGCTTCCATTCACCTGTGAGAGGGAACTCACGAGCAAGCGTCAAAAAGTGGTCGAGGCGGAGGATATAAATTCAATTCAATTGAAGGCTACAGAAAGTTCTATAGTAGAGTGGCTGAAGAACCTTGATGAAGGGGCTACTTTGATTGATATTTTGAAGCACTTCAAGGGATCAAATGAAGATTCTGTGGTTGAGTTGCTGAATTGTCTTGAGGGTGACTTTTCTATATATAAGAAAGGTAGCTTGTATAAGATTATGTGA 2721 0.4035 MTLRFSSLPTMESMSSVLKKYFGFADYRPYQKDVIQKIIEKKDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKQRGVRAEYIGSTQMDNTIQTRAEHGQFDILFMTPEKACTISSSFWSNLLKEGISLLAVDEAHCISEWGHDFRVEYKQLDKLRVFLPDVPFVGLTATATEKVRFDIITSLKMNNPYVSVGSFDRANLFYGVKLFNRGQSFVDELVQDISKQLSSGGSTIIYCITIKDVEQIFKSLAEAGIEAGMYHGQMNKKAREESHRLFVRDELQIMVATIAFGMGIDKPNVRQVIHYGCPKSIESYYQESGRCGRDGIASACWLYYTRRDFNLGEFYCQDLKSESQKKAVMESLRAAERYCVLTTCRRKFLLGYFGENFSADRCGNCDNCTVSKKERDMSREAFLLMACIHSCHGKWGLNMPIDILRGSRAKKIVEAQFDKLPLHGLGKTYPSTWWRALGNQLISHGYLKETVVDFYRFISVDAKGETFLASSTPDYQPRLVLSLTAEMLGEEENGSTQEEFKTLATSESEGFSEAERQLYQRLLEERLKLARSVGTAPYAICGDQTIRKITLTRPSTKARLANIDGVNQHLVTKYGDQFLQVIQKLSQELNLSSDKEATVHTNEVRKVSLVTNQSRKLPPAKLEAWRMWHEDGLSIQMIANFPGRSAPIKEQTVAEYLLEAAQDGLPFDWTRYSEMIGLTKEIILQIQGAISKVGSTEKLKPIKNELPEDISYQHIKTYLTMLNCGVSSEAIQPGDHYAGKDDELVNNEASISSKSLIEKCDLTTNDIPSGAVNGGYQLRKLPFTCERELTSKRQKVVEAEDINSIQLKATESSIVEWLKNLDEGATLIDILKHFKGSNEDSVVELLNCLEGDFSIYKKGSLYKIM* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0256 906 Gene3D - 210 411 IPR027417 -
Lan4g0256 906 Pfam DEAD/DEAH box helicase 29 188 IPR011545 GO:0003676|GO:0005524
Lan4g0256 906 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 35 202 IPR014001 -
Lan4g0256 906 Gene3D HRDC domain 551 638 IPR044876 -
Lan4g0256 906 SMART hrdc7 553 633 IPR002121 GO:0003676
Lan4g0256 906 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 16 468 IPR004589 GO:0004386|GO:0006310
Lan4g0256 906 Pfam RQC domain 414 510 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lan4g0256 906 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 351 IPR027417 -
Lan4g0256 906 Pfam HRDC domain 557 623 IPR002121 GO:0003676
Lan4g0256 906 PANTHER DNA HELICASE RECQ FAMILY MEMBER 11 751 - -
Lan4g0256 906 ProSiteProfiles HRDC domain profile. 553 633 IPR002121 GO:0003676
Lan4g0256 906 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 226 381 IPR001650 -
Lan4g0256 906 Gene3D - 6 208 IPR027417 -
Lan4g0256 906 SUPERFAMILY HRDC-like 551 631 IPR010997 GO:0000166|GO:0044237
Lan4g0256 906 Gene3D - 412 536 IPR036388 -
Lan4g0256 906 Pfam Helix-turn-helix domain 663 760 IPR029491 -
Lan4g0256 906 CDD DEXHc_RecQ 16 209 - -
Lan4g0256 906 CDD SF2_C_RecQ 210 345 - -
Lan4g0256 906 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 11 751 - -
Lan4g0256 906 SMART RQC_2 417 521 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lan4g0256 906 Pfam RecQ zinc-binding 359 410 IPR032284 -
Lan4g0256 906 SMART helicmild6 255 336 IPR001650 -
Lan4g0256 906 SUPERFAMILY "Winged helix" DNA-binding domain 408 516 IPR036390 -
Lan4g0256 906 SMART ultradead3 23 220 IPR014001 -
Lan4g0256 906 Pfam Helicase conserved C-terminal domain 234 335 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0256 Lan-Chr4 4128472 4139078 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0256 22 338 Eukaryotic Initiation Factors Gene Family AT3G19760 23.582 2.12e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0256 K03654 - gmx:100797777 1441.02